Olfactory bulb

Summary

The olfactory bulb is the region in the brain receiving input from the olfactory neurons in the nasal olfactory epithelium. It is organized in glomeruli (one per smell) and innervates the dendrites of mitral cells that project to other forebrain regions including the olfactory cortex. Local circuits in the glomeruli and plexiform layers finetune the olfactory output information. It consists of the main olfactory bulb and the accessory olfactory bulb, involved in the detection of pheromones. The olfactory bulb is located inferior (bottom) of the human brain, while in most vertebrates it is the most rostral (front) region of the brain. The olfactory bulb is relatively small in humans compared to other vertebrates. Odor molecules are detected by the olfactory sensory neurons in the olfactory epithelium. The signal transduction starts at the olfactory receptors present on the cilia of the sensory neuronal dendrites, covering the surface of the olfactory epithelium. The binding of the odor molecule triggers an electrical response and sensory signals to the olfactory nerve fiber. The olfactory nerve fibers pass through the plate of the bone and connect the epithelium to the olfactory bulbs of the brain.


Figure 1. Schematic overview of the peripheral (olfactory epithelium) and central (olfactory bulb in the brain) olfactory system. The major cells and structures involved in the olfactory system is illustrated and marked with names.

The transcriptome analysis shows that 100% (n=20090) of all human protein-coding genes (n=20090) are expressed in the human olfactory. Human one-to-one orthologues were investigated in pig and mouse brain, suggesting that 12163 of all mouse one-to-one orthologues (n=16320) are expressed in the mouse olfactory bulb and that 12974 of all pig orthologues (n=15829) are expressed in the pig olfactory bulb.

Gene classification based on regional RNA expression in human, pig and mouse cerebellum defines 91 genes as olfactory bulb enriched in either of the three species, and 0 out of those genes show highest expression levels in olfactory bulb in all three species.

Anatomical divisions

The olfactory bulb is built up by five different layers:

  • Glomerular layer
  • External plexiform layer
  • Mitral cell layer
  • Internal plexiform layer
  • Granule cell layer

The glomeruli layer is organized into zones and clusters representing different spatial odors and is the first level of synaptic processing. The second level is the external plexiform layer, which mainly includes dendrites from the mitral cells, GABAergic granule cells, astrocytes and interneurons. Mitral cells are the third step in the processing, proving the output to the olfactory cortex, and receiving information from the granule cell layer, located in the center of the olfactory bulb.


SLC17A6

ADORA2A

DRD2

C17orf75

CRB2

ARFGEF1

U2AF2

CAMK2B

DPP6

Examples of proteins located in glomeruli layer in the mouse olfactory is SLC17A6, ADORA2A and DRD2. Several examples above show positivity in the external plexiform layer, for example CRB2 while C17orf75, ARFGEF1 is located to Mitral cells and their processes in the external plexiform layer. U2AF2 is located in several different cell types, including Mitral cells and DPP6 show a distinct positivity in processes in all the different layers.

Regionally elevated protein expression in human

The current version of the human protein atlas does not contain data on the human olfactory bulb.

Regionally elevated protein expression in mouse

The mouse olfactory bulb is similar to the human olfactory bulb, but larger and with a rostral position. The two olfactory bulbs are often seen as coronal sections, with the different layers clearly visible. In Figure 2, TH staining of mouse olfactory bulb indicates strong labeling of the glomerular layer. Mouse protein profiling in the Brain Atlas includes sections of olfactory bulb and 10 separate structures of the olfactory bulb are annotated separately (Glomerular layer, external plexiform layer, mitral cell layer, internal plexiform layer, granule cell layer as well as rostral migratory stream, anterior olfactory nucleus and glomeruli layer, external plexiform layer and granule cell layer of the accessory Olfactory bulb).

Table 2: Number of genes within the different categories of regionally elevated expression, in mouse olfactory bulb

Specificity Number of Mouse elevated genes
Region enriched 78
Group enriched 35
Region enhanced 43
Elevated 156


Glomerular layer

The transcriptome analysis shows that 61% (n=12163) of mouse genes with one-to-one orthologue human genes (n=16320) are expressed in the olfactory bulb and 156 genes show an elevated expression in olfactory bulb compared to other regions of the mouse brain.

Elevated expression in olfactory bulb compared to other brain regions is divided into three different categories; regionally enriched (at least four-fold higher mRNA levels in olfactory bulb compared to all other regions), group enriched (at least four-fold higher mRNA levels in a group of 2-5 regions) and regionally enhanced (at least four-fold higher mRNA levels in olfactory bulb compared to the average of all regions), The number of genes in the individual category is shown in Table 2. In Table 3, the 12 genes with the highest level of regional specificity among the 78 enriched genes are listed.

Table 3: The 12 genes with the highest level of enriched expression in mouse olfactory bulb. "Predicted localization" shows the classification of each gene into three main classes: Secreted, Membrane, and Intracellular, where the latter consists of genes without any predicted membrane and secreted features. RS-score (Regional Specificity score) corresponds to the score calculated as the fold change to the second highest region.

Gene Description Predicted location RS-score
S100A5 S100 calcium binding protein A5 Intracellular 86
LIPF Lipase F, gastric type Secreted 77
OMP Olfactory marker protein Intracellular 62
KLHL30 Kelch like family member 30 Intracellular 35
FRMD7 FERM domain containing 7 Intracellular 28
MS4A15 Membrane spanning 4-domains A15 Membrane 28
TBX21 T-box transcription factor 21 Intracellular 27
GDPD4 Glycerophosphodiester phosphodiesterase domain containing 4 Membrane 23
SHISA3 Shisa family member 3 Membrane 23
CDHR1 Cadherin related family member 1 Intracellular,Membrane 21
TAFA3 TAFA chemokine like family member 3 Secreted 21
KCNK15 Potassium two pore domain channel subfamily K member 15 Membrane 18

SCGN and DCX are two examples of proteins with an elevated expression in olfactory bulb. The RNA expression of DCX is rather similar in mouse and pig, while human brain shows a more general forebrain expression. In mouse brain, the protein is detected in a limited subpopulation of neuronal cell bodies and their processes in both hippocampus and olfactory bulb. SCGN is a protein with distinct difference between human and mouse, the expression in mouse is restricted to the olfactory bulb and the protein is detected in the granular layer of olfactory bulb, while in human SCGN is expressed in hypothalamus and cerebellum.


SCGN

DCX

Regionally elevated protein expression in pig

Table 4: Number of genes within the different categories of regionally elevated expression, in pig olfactory bulb.

Specificity Number of Pig elevated genes
Region enriched 22
Group enriched 36
Region enhanced 17
Elevated 75

The pig olfactory bulb is similar to the human olfactory bulb, but larger and with a rostral position.

The transcriptome analysis shows that 65% (n=12974) of all pig one-to-one human orthologue genes (n=15829) are expressed in the olfactory bulb, and 75 genes show an elevated expression in olfactory bulb compared to other regions of the brain.

Elevated expression in olfactory bulb compared to other brain regions is divided into three different categories; regionally enriched (at least four-fold higher mRNA levels in olfactory bulb compared to all other regions), group enriched (at least four-fold higher mRNA levels in a group of 2-5 regions) and regionally enhanced (at least four-fold higher mRNA levels in olfactory bulb compared to the average of all regions), The number of genes in the individual category is shown in Table 4. In Table 5, the 12 genes with the highest level of regional specificity among the 22 enriched genes are listed.

Table 5: The 12 genes with the highest level of enriched expression in pig olfactory bulb. "Predicted localization" shows the classification of each gene into three main classes: Secreted, Membrane, and Intracellular, where the latter consists of genes without any predicted membrane and secreted features. RS-score (Regional Specificity score) corresponds to the score calculated as the fold change to the second highest regional.

Gene Description Predicted location RS-score
FRMD7 FERM domain containing 7 Intracellular 86
ALX4 ALX homeobox 4 Intracellular 31
MS4A15 Membrane spanning 4-domains A15 Membrane 26
TRDN Triadin Intracellular,Membrane 23
S100A5 S100 calcium binding protein A5 Intracellular 15
OR52D1 Olfactory receptor family 52 subfamily D member 1 Membrane 13
RNF17 Ring finger protein 17 Intracellular 13
SP8 Sp8 transcription factor Intracellular 11
CHI3L1 Chitinase 3 like 1 Intracellular,Secreted 10
OR51I1 Olfactory receptor family 51 subfamily I member 1 Membrane 9
SCGN Secretagogin, EF-hand calcium binding protein Intracellular 9
CACNA1S Calcium voltage-gated channel subunit alpha1 S Membrane 8

Extended information

No extended information for the olfactory bulb.