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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:56.6 nTPM
HPA:56.6 nTPM
GTEx:60.2 nTPM
FANTOM5:164.1 Scaled Tags Per Million
Pig:20.6 nTPM
Mouse:100.6 nTPM
Allen mouse:12.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA048798
Glial cells Low
Neuronal cells High

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.5
2846 Female, age 79, unknown 61.1
2481 Female, age 94, left hemisphere 54.7
1857 Female, age 85, left hemisphere 54.5
2288 Male, age 75, left hemisphere 54.4
2289 Male, age 61, right hemisphere 53.9
2290 Female, age 72, unknown 53.4
1781 Male, age 74, unknown 52.7
1854 Male, age 80, left hemisphere 51.6
Claustrum
nTPM: 54.1
1956 Male, age 74, unknown 61.7
2196 Female, age 79, unknown 60.4
2198 Male, age 80, both hemispheres 55.5
2292 Female, age 85, both hemispheres 55.1
2568 Male, age 61, both hemispheres 53.7
2284 Female, age 91, both hemispheres 50.7
2645 Female, age 72, unknown 50.5
2491 Male, age 75, both hemispheres 50.3
2392 Female, age 94, both hemispheres 49.0
Globus pallidus, externus
nTPM: 55.9
2567 Female, age 72, unknown 57.6
2646 Male, age 61, right hemisphere 57.2
1996 Male, age 80, right hemisphere 56.3
2395 Male, age 75, both hemispheres 54.3
2772 Female, age 79, unknown 54.1
Globus pallidus, internus
nTPM: 55.0
2287 Male, age 75, right hemisphere 58.0
1818 Male, age 74, unknown 56.4
2778 Female, age 91, both hemispheres 55.3
2483 Female, age 94, right hemisphere 55.2
2566 Female, age 72, unknown 54.5
2037 Male, age 80, right hemisphere 54.1
2111 Female, age 85, right hemisphere 51.2
Nucleus accumbens
nTPM: 53.4
2698 Female, age 72, unknown 64.3
2391 Female, age 94, left hemisphere 56.7
1783 Male, age 74, unknown 53.0
1856 Female, age 91, right hemisphere 52.0
2732 Male, age 80, right hemisphere 51.6
2286 Male, age 75, left hemisphere 51.3
1806 Female, age 85, left hemisphere 50.4
2824 Male, age 61, right hemisphere 47.9
Nucleus basalis of Meynert
nTPM: 56.6
2821 Male, age 75, both hemispheres 64.2
2569 Male, age 61, both hemispheres 59.0
2393 Male, age 80, right hemisphere 52.1
2484 Female, age 94, left hemisphere 51.1
Nucleus of the diagonal band
nTPM: 51.6
2195 Female, age 85, both hemispheres 55.3
1812 Female, age 91, both hemispheres 53.2
1979 Male, age 74, unknown 51.7
2775 Male, age 80, right hemisphere 50.1
2029 Male, age 61, right hemisphere 47.9
Olfactory tubercle
nTPM: 51.1
1846 Male, age 80, right hemisphere 55.4
2856 Male, age 75, right hemisphere 51.8
1998 Female, age 91, both hemispheres 49.9
2487 Female, age 94, left hemisphere 47.3
Putamen
nTPM: 55.3
2482 Female, age 94, left hemisphere 59.2
1838 Male, age 80, right hemisphere 56.7
2647 Male, age 75, left hemisphere 56.6
2489 Female, age 72, unknown 55.4
1829 Male, age 74, unknown 55.2
1937 Female, age 91, right hemisphere 54.0
2466 Female, age 79, unknown 50.1
Septal nuclei
nTPM: 53.4
2629 Female, age 94, right hemisphere 67.5
2199 Male, age 80, right hemisphere 57.5
2009 Female, age 91, both hemispheres 53.2
2031 Female, age 72, unknown 50.2
1960 Male, age 74, unknown 49.6
2059 Female, age 85, both hemispheres 49.0
2394 Male, age 61, left hemisphere 47.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 60.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 60.2
Samples: 246

Max nTPM: 101.8
Min nTPM: 37.6
Std nTPM: 10.0
Median nTPM: 58.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 101.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 97.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 96.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 91.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 89.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 89.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 89.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 89.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 86.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 86.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 84.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 56.8
Samples: 246

Max nTPM: 144.5
Min nTPM: 37.7
Std nTPM: 9.8
Median nTPM: 55.5
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 144.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 99.1
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 82.7
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 80.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 79.9
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 78.4
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 78.1
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 76.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 76.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 74.8
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 74.3
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Brain - Putamen (basal ganglia)
Average nTPM: 59.6
Samples: 205

Max nTPM: 86.0
Min nTPM: 46.8
Std nTPM: 7.2
Median nTPM: 58.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 86.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 83.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 80.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 80.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 79.1
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 78.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 77.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 77.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 77.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 75.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 74.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 164.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 138.6
FF:10164-103B2 76 years, female 138.6
Globus pallidus
Scaled Tags Per Million: 131.6
FF:10161-103A8 76 years, female 153.5
FF:10175-103C4 60 years, female 109.7
Nucleus accumbens
Scaled Tags Per Million: 140.7
FF:10037-101F1 23-56 years, mixed 140.7
Putamen
Scaled Tags Per Million: 164.1
FF:10176-103C5 60 years, female 164.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.6
Pig sample Sample description nTPM
Caudate
nTPM: 17.1
Samples: 4

Max nTPM: 20.0
Min nTPM: 15.2
Sample A Female 17.4
Sample B Female 15.6
Sample C Male 20.0
Sample D Male 15.2
Putamen
nTPM: 20.6
Samples: 4

Max nTPM: 22.6
Min nTPM: 17.0
Sample A Female 22.2
Sample B Female 17.0
Sample C Male 22.6
Sample D Male 20.5
Septum
nTPM: 18.6
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.3
Sample A Female 20.4
Sample B Female 16.3
Sample C Male 18.0
Sample D Male 19.5
Ventral pallidum
nTPM: 18.6
Samples: 4

Max nTPM: 19.8
Min nTPM: 17.4
Sample A Female 18.4
Sample B Female 17.4
Sample C Male 18.7
Sample D Male 19.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 100.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 98.2
Samples: 4

Max nTPM: 103.5
Min nTPM: 90.5
Sample A Male 102.1
Sample B Male 90.5
Sample C Female 103.5
Sample D Female 96.8
Septum
nTPM: 100.6
Samples: 4

Max nTPM: 103.9
Min nTPM: 97.2
Sample A Male 103.9
Sample B Male 97.2
Sample C Female 97.7
Sample D Female 103.5
Ventral forebrain
nTPM: 94.8
Samples: 4

Max nTPM: 103.2
Min nTPM: 88.9
Sample A Male 90.7
Sample B Male 103.2
Sample C Female 88.9
Sample D Female 96.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 12.3
68443351 Antisense, RP_050111_01_G12, Mouse strain C57BL/6J (56 days, male) 12.3
Pallidum
Expression energy: 12.4
68443351 Antisense, RP_050111_01_G12, Mouse strain C57BL/6J (56 days, male) 12.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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