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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:40.4 nTPM
HPA:40.4 nTPM
GTEx:49.3 nTPM
FANTOM5:115.2 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:63.0 nTPM
Allen mouse:1.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA019473
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.4
2481 Female, age 94, left hemisphere 43.9
2846 Female, age 79, unknown 41.5
1857 Female, age 85, left hemisphere 40.8
2288 Male, age 75, left hemisphere 40.8
1854 Male, age 80, left hemisphere 39.6
1781 Male, age 74, unknown 39.5
2290 Female, age 72, unknown 38.9
2289 Male, age 61, right hemisphere 38.2
Claustrum
nTPM: 38.5
1956 Male, age 74, unknown 42.4
2196 Female, age 79, unknown 41.1
2198 Male, age 80, both hemispheres 40.2
2392 Female, age 94, both hemispheres 37.7
2568 Male, age 61, both hemispheres 37.5
2292 Female, age 85, both hemispheres 37.4
2491 Male, age 75, both hemispheres 37.1
2645 Female, age 72, unknown 37.1
2284 Female, age 91, both hemispheres 36.0
Globus pallidus, externus
nTPM: 39.4
2772 Female, age 79, unknown 44.6
1996 Male, age 80, right hemisphere 42.1
2395 Male, age 75, both hemispheres 38.7
2646 Male, age 61, right hemisphere 37.2
2567 Female, age 72, unknown 34.6
Globus pallidus, internus
nTPM: 40.1
2287 Male, age 75, right hemisphere 43.8
1818 Male, age 74, unknown 42.5
2037 Male, age 80, right hemisphere 40.7
2778 Female, age 91, both hemispheres 40.5
2483 Female, age 94, right hemisphere 39.3
2111 Female, age 85, right hemisphere 36.9
2566 Female, age 72, unknown 36.7
Nucleus accumbens
nTPM: 40.3
2286 Male, age 75, left hemisphere 43.3
2698 Female, age 72, unknown 42.8
2391 Female, age 94, left hemisphere 40.7
1856 Female, age 91, right hemisphere 40.5
1806 Female, age 85, left hemisphere 40.2
1783 Male, age 74, unknown 40.1
2732 Male, age 80, right hemisphere 37.5
2824 Male, age 61, right hemisphere 37.5
Nucleus basalis of Meynert
nTPM: 38.8
2821 Male, age 75, both hemispheres 41.5
2393 Male, age 80, right hemisphere 38.4
2484 Female, age 94, left hemisphere 37.9
2569 Male, age 61, both hemispheres 37.4
Nucleus of the diagonal band
nTPM: 40.1
1812 Female, age 91, both hemispheres 42.9
2195 Female, age 85, both hemispheres 40.4
1979 Male, age 74, unknown 39.8
2775 Male, age 80, right hemisphere 39.6
2029 Male, age 61, right hemisphere 38.0
Olfactory tubercle
nTPM: 39.7
1846 Male, age 80, right hemisphere 41.4
2856 Male, age 75, right hemisphere 40.4
1998 Female, age 91, both hemispheres 39.0
2487 Female, age 94, left hemisphere 37.8
Putamen
nTPM: 38.8
2482 Female, age 94, left hemisphere 42.8
2466 Female, age 79, unknown 40.0
1829 Male, age 74, unknown 38.6
1937 Female, age 91, right hemisphere 38.3
1838 Male, age 80, right hemisphere 37.5
2647 Male, age 75, left hemisphere 37.4
2489 Female, age 72, unknown 37.0
Septal nuclei
nTPM: 39.6
2629 Female, age 94, right hemisphere 43.2
2031 Female, age 72, unknown 41.8
1960 Male, age 74, unknown 40.5
2199 Male, age 80, right hemisphere 38.6
2394 Male, age 61, left hemisphere 37.9
2059 Female, age 85, both hemispheres 37.7
2009 Female, age 91, both hemispheres 37.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.1
Samples: 246

Max nTPM: 75.7
Min nTPM: 35.4
Std nTPM: 5.9
Median nTPM: 47.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 75.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 64.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 63.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 63.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 62.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 61.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 61.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 60.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 60.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 60.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 59.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.3
Samples: 246

Max nTPM: 74.3
Min nTPM: 33.2
Std nTPM: 5.9
Median nTPM: 48.8
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 74.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 66.1
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 65.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 65.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 65.2
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 60.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 60.8
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 60.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 60.2
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 60.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 59.9
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Brain - Putamen (basal ganglia)
Average nTPM: 47.4
Samples: 205

Max nTPM: 84.3
Min nTPM: 33.6
Std nTPM: 6.4
Median nTPM: 47.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 84.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 66.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 65.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 62.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 62.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 59.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 58.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 58.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 58.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 58.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 57.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 77.5
FF:10164-103B2 76 years, female 77.5
Globus pallidus
Scaled Tags Per Million: 79.8
FF:10175-103C4 60 years, female 80.5
FF:10161-103A8 76 years, female 79.1
Nucleus accumbens
Scaled Tags Per Million: 115.2
FF:10037-101F1 23-56 years, mixed 115.2
Putamen
Scaled Tags Per Million: 89.2
FF:10176-103C5 60 years, female 89.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.2
Pig sample Sample description nTPM
Caudate
nTPM: 30.0
Samples: 4

Max nTPM: 33.7
Min nTPM: 27.4
Sample A Female 30.2
Sample B Female 28.7
Sample C Male 33.7
Sample D Male 27.4
Putamen
nTPM: 35.2
Samples: 4

Max nTPM: 38.4
Min nTPM: 27.4
Sample A Female 38.1
Sample B Female 27.4
Sample C Male 38.4
Sample D Male 36.8
Septum
nTPM: 34.7
Samples: 4

Max nTPM: 39.0
Min nTPM: 29.5
Sample A Female 34.7
Sample B Female 29.5
Sample C Male 39.0
Sample D Male 35.6
Ventral pallidum
nTPM: 33.0
Samples: 4

Max nTPM: 36.7
Min nTPM: 28.3
Sample A Female 28.3
Sample B Female 32.7
Sample C Male 36.7
Sample D Male 34.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 63.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 55.7
Samples: 4

Max nTPM: 57.5
Min nTPM: 53.8
Sample A Male 56.3
Sample B Male 57.5
Sample C Female 55.1
Sample D Female 53.8
Septum
nTPM: 63.0
Samples: 4

Max nTPM: 63.9
Min nTPM: 61.9
Sample A Male 63.9
Sample B Male 62.3
Sample C Female 63.8
Sample D Female 61.9
Ventral forebrain
nTPM: 60.7
Samples: 4

Max nTPM: 63.5
Min nTPM: 57.5
Sample A Male 61.6
Sample B Male 63.5
Sample C Female 57.5
Sample D Female 60.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
68632063 Antisense, RP_050125_01_F05, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 1.3
68632063 Antisense, RP_050125_01_F05, Mouse strain C57BL/6J (56 days, male) 1.3

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