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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:15.2 nTPM
HPA:15.2 nTPM
GTEx:17.9 nTPM
FANTOM5:51.6 Scaled Tags Per Million
Pig:28.5 nTPM
Mouse:27.2 nTPM
Allen mouse:7.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA027524Antibody CAB058686Antibody CAB079943
Glial cells MediumMediumLow
Neuronal cells LowLowHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 15.2
Sample id Sample description nTPM
Hippocampus
nTPM: 14.6
2529 Female, age 94, left hemisphere 17.8
2148 Female, age 91, left hemisphere 15.7
2621 Female, age 67, right hemisphere 15.5
1898 Male, age 80, left hemisphere 13.8
1911 Female, age 85, right hemisphere 13.1
1855 Male, age 76, left hemisphere 11.9
Dentate gyrus
nTPM: 13.8
2530 Female, age 94, left hemisphere 15.8
2010 Male, age 76, both hemispheres 14.8
2531 Female, age 67, both hemispheres 13.9
2246 Female, age 85, both hemispheres 13.7
2528 Male, age 74, both hemispheres 13.7
1927 Female, age 91, both hemispheres 11.0
Entorhinal gyrus
nTPM: 13.4
1787 Male, age 76, left hemisphere 15.0
2117 Female, age 91, right hemisphere 14.9
1938 Female, age 85, left hemisphere 14.2
2686 Male, age 75, right hemisphere 13.5
2613 Female, age 94, left hemisphere 11.5
2764 Male, age 80, right hemisphere 11.3
Hippocampus, CA1
nTPM: 12.8
2527 Male, age 74, both hemispheres 16.8
2045 Male, age 76, both hemispheres 12.4
2082 Female, age 91, right hemisphere 12.3
1873 Female, age 85, both hemispheres 11.9
2749 Male, age 80, left hemisphere 10.5
Hippocampus, CA2
nTPM: 12.9
2249 Male, age 74, both hemispheres 15.5
2437 Female, age 94, left hemisphere 14.4
1940 Female, age 85, left hemisphere 13.5
2113 Female, age 91, right hemisphere 13.3
1892 Male, age 76, both hemispheres 11.4
1963 Male, age 80, left hemisphere 9.1
Hippocampus, CA3
nTPM: 11.4
1891 Female, age 85, both hemispheres 12.7
2861 Female, age 67, both hemispheres 12.7
1867 Male, age 76, both hemispheres 12.1
2436 Male, age 74, both hemispheres 11.7
2620 Female, age 94, left hemisphere 10.2
2137 Male, age 80, left hemisphere 9.2
Parahippocampal cortex
nTPM: 15.2
2250 Female, age 67, right hemisphere 17.4
2622 Female, age 67, right hemisphere 16.6
2532 Female, age 72, left hemisphere 15.9
2245 Female, age 91, both hemispheres 15.6
2018 Male, age 76, both hemispheres 15.2
1850 Male, age 80, both hemispheres 15.1
1933 Female, age 85, both hemispheres 15.1
2692 Male, age 74, both hemispheres 14.7
1990 Female, age 91, right hemisphere 13.5
2693 Female, age 94, both hemispheres 13.0
Perirhinal gyrus
nTPM: 14.9
2848 Male, age 76, right hemisphere 16.7
1841 Female, age 85, right hemisphere 16.0
1794 Male, age 80, right hemisphere 14.7
1847 Female, age 91, left hemisphere 13.9
2521 Female, age 94, right hemisphere 13.2
Subiculum
nTPM: 14.0
2438 Female, age 94, left hemisphere 16.8
2729 Female, age 91, right hemisphere 16.1
2619 Male, age 74, both hemispheres 15.4
2042 Male, age 76, both hemispheres 13.1
1977 Female, age 85, both hemispheres 12.0
1901 Male, age 80, both hemispheres 10.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.9
Samples: 197

Max nTPM: 45.4
Min nTPM: 7.9
Std nTPM: 5.7
Median nTPM: 17.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 45.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 33.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 33.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 31.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 31.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 30.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 30.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 29.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 29.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 29.0
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 29.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.6
FF:10153-102I9 76 years, female 55.2
FF:10169-103B7 60 years, female 48.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 24.8
Samples: 4

Max nTPM: 33.0
Min nTPM: 20.2
Sample A Female 25.2
Sample B Female 20.2
Sample C Male 33.0
Sample D Male 20.6
Entorhinal cortex
nTPM: 26.5
Samples: 4

Max nTPM: 28.2
Min nTPM: 23.9
Sample A Female 28.2
Sample B Female 26.9
Sample C Male 27.1
Sample D Male 23.9
Subiculum
nTPM: 28.5
Samples: 4

Max nTPM: 33.2
Min nTPM: 25.3
Sample A Female 33.2
Sample B Female 25.3
Sample C Male 27.0
Sample D Male 28.5
Ventral hippocampus
nTPM: 23.1
Samples: 4

Max nTPM: 26.3
Min nTPM: 21.5
Sample A Female 21.5
Sample B Female 21.8
Sample C Male 26.3
Sample D Male 22.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 27.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 27.2
Samples: 4

Max nTPM: 27.8
Min nTPM: 26.3
Sample A Male 27.2
Sample B Male 27.5
Sample C Female 26.3
Sample D Female 27.8
Hippocampal formation
nTPM: 24.0
Samples: 4

Max nTPM: 26.2
Min nTPM: 21.2
Sample A Male 26.2
Sample B Male 25.4
Sample C Female 21.2
Sample D Female 23.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.6
71380441 Antisense, RP_050407_04_F10, Mouse strain C57BL/6J (56 days, male) 7.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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