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NKX6-2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.4 nTPM
HPA:68.4 nTPM
GTEx:40.1 nTPM
FANTOM5:79.7 Scaled Tags Per Million
Pig:10.2 nTPM
Mouse:2.3 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 68.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.0
2288 Male, age 75, left hemisphere 43.9
1781 Male, age 74, unknown 31.7
2481 Female, age 94, left hemisphere 30.0
2846 Female, age 79, unknown 28.7
2290 Female, age 72, unknown 26.6
1854 Male, age 80, left hemisphere 25.8
2289 Male, age 61, right hemisphere 24.2
1857 Female, age 85, left hemisphere 21.0
Claustrum
nTPM: 46.3
2292 Female, age 85, both hemispheres 79.6
1956 Male, age 74, unknown 56.3
2198 Male, age 80, both hemispheres 45.0
2491 Male, age 75, both hemispheres 42.8
2196 Female, age 79, unknown 41.4
2392 Female, age 94, both hemispheres 40.7
2284 Female, age 91, both hemispheres 38.9
2568 Male, age 61, both hemispheres 38.9
2645 Female, age 72, unknown 33.1
Globus pallidus, externus
nTPM: 68.4
2567 Female, age 72, unknown 81.0
2646 Male, age 61, right hemisphere 80.7
1996 Male, age 80, right hemisphere 69.2
2772 Female, age 79, unknown 63.4
2395 Male, age 75, both hemispheres 47.8
Globus pallidus, internus
nTPM: 68.0
2111 Female, age 85, right hemisphere 96.0
2778 Female, age 91, both hemispheres 79.4
2566 Female, age 72, unknown 79.2
2037 Male, age 80, right hemisphere 58.3
2287 Male, age 75, right hemisphere 56.8
2483 Female, age 94, right hemisphere 53.9
1818 Male, age 74, unknown 52.6
Nucleus accumbens
nTPM: 36.3
2391 Female, age 94, left hemisphere 55.6
2732 Male, age 80, right hemisphere 51.6
2698 Female, age 72, unknown 40.4
2286 Male, age 75, left hemisphere 36.9
1806 Female, age 85, left hemisphere 31.6
1783 Male, age 74, unknown 29.8
2824 Male, age 61, right hemisphere 25.0
1856 Female, age 91, right hemisphere 19.8
Nucleus basalis of Meynert
nTPM: 42.0
2569 Male, age 61, both hemispheres 71.4
2821 Male, age 75, both hemispheres 36.1
2484 Female, age 94, left hemisphere 32.5
2393 Male, age 80, right hemisphere 27.9
Nucleus of the diagonal band
nTPM: 19.1
1979 Male, age 74, unknown 23.3
1812 Female, age 91, both hemispheres 21.5
2029 Male, age 61, right hemisphere 17.2
2195 Female, age 85, both hemispheres 17.1
2775 Male, age 80, right hemisphere 16.2
Olfactory tubercle
nTPM: 20.2
1998 Female, age 91, both hemispheres 22.2
2856 Male, age 75, right hemisphere 21.2
2487 Female, age 94, left hemisphere 19.7
1846 Male, age 80, right hemisphere 17.7
Putamen
nTPM: 34.0
2647 Male, age 75, left hemisphere 46.5
2489 Female, age 72, unknown 41.1
2482 Female, age 94, left hemisphere 38.6
1829 Male, age 74, unknown 35.0
1937 Female, age 91, right hemisphere 31.5
2466 Female, age 79, unknown 26.5
1838 Male, age 80, right hemisphere 18.8
Septal nuclei
nTPM: 24.0
2394 Male, age 61, left hemisphere 38.7
2199 Male, age 80, right hemisphere 26.1
2059 Female, age 85, both hemispheres 25.7
2629 Female, age 94, right hemisphere 21.5
2009 Female, age 91, both hemispheres 19.7
2031 Female, age 72, unknown 19.3
1960 Male, age 74, unknown 17.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.0
Samples: 246

Max nTPM: 106.4
Min nTPM: 2.3
Std nTPM: 15.1
Median nTPM: 22.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 106.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 91.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 80.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 72.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 72.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 70.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 69.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 64.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 61.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 59.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 56.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.1
Samples: 246

Max nTPM: 115.2
Min nTPM: 3.2
Std nTPM: 14.5
Median nTPM: 13.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 115.2
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 94.2
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 63.6
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 61.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 61.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 61.0
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 59.0
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 55.8
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 55.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 51.4
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 50.9
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Brain - Putamen (basal ganglia)
Average nTPM: 40.1
Samples: 205

Max nTPM: 183.9
Min nTPM: 5.2
Std nTPM: 21.4
Median nTPM: 35.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 183.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 119.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 101.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 95.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 93.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 91.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 86.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 84.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 83.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 83.4
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 83.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.6
FF:10164-103B2 76 years, female 13.6
Globus pallidus
Scaled Tags Per Million: 79.7
FF:10161-103A8 76 years, female 85.2
FF:10175-103C4 60 years, female 74.2
Nucleus accumbens
Scaled Tags Per Million: 18.5
FF:10037-101F1 23-56 years, mixed 18.5
Putamen
Scaled Tags Per Million: 21.7
FF:10176-103C5 60 years, female 21.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.2
Pig sample Sample description nTPM
Caudate
nTPM: 3.2
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.7
Sample A Female 3.8
Sample B Female 2.9
Sample C Male 3.4
Sample D Male 2.7
Putamen
nTPM: 10.2
Samples: 4

Max nTPM: 17.6
Min nTPM: 4.3
Sample A Female 17.6
Sample B Female 4.3
Sample C Male 8.9
Sample D Male 10.1
Septum
nTPM: 6.8
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.1
Sample A Female 7.0
Sample B Female 5.1
Sample C Male 8.5
Sample D Male 6.4
Ventral pallidum
nTPM: 9.9
Samples: 4

Max nTPM: 16.0
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 8.7
Sample C Male 16.0
Sample D Male 11.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.2
Samples: 4

Max nTPM: 5.6
Min nTPM: 0.4
Sample A Male 1.4
Sample B Male 5.6
Sample C Female 1.3
Sample D Female 0.4
Septum
nTPM: 2.3
Samples: 4

Max nTPM: 4.0
Min nTPM: 1.4
Sample A Male 1.7
Sample B Male 2.0
Sample C Female 4.0
Sample D Female 1.4
Ventral forebrain
nTPM: 1.5
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.0
Sample A Male 1.3
Sample B Male 1.0
Sample C Female 1.7
Sample D Female 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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