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NKX6-2
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.5 nTPM
HPA:37.5 nTPM
GTEx:54.5 nTPM
FANTOM5:25.7 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:0.9 nTPM

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.5
Sample id Sample description nTPM
Hippocampus
nTPM: 27.8
1911 Female, age 85, right hemisphere 32.9
2529 Female, age 94, left hemisphere 32.7
2621 Female, age 67, right hemisphere 27.5
1898 Male, age 80, left hemisphere 27.4
2148 Female, age 91, left hemisphere 25.6
1855 Male, age 76, left hemisphere 20.9
Dentate gyrus
nTPM: 29.6
2530 Female, age 94, left hemisphere 46.5
2010 Male, age 76, both hemispheres 30.0
2528 Male, age 74, both hemispheres 28.2
2246 Female, age 85, both hemispheres 25.9
2531 Female, age 67, both hemispheres 25.9
1927 Female, age 91, both hemispheres 21.4
Entorhinal gyrus
nTPM: 32.7
2117 Female, age 91, right hemisphere 51.8
2764 Male, age 80, right hemisphere 42.1
2686 Male, age 75, right hemisphere 26.8
1787 Male, age 76, left hemisphere 25.7
1938 Female, age 85, left hemisphere 25.2
2613 Female, age 94, left hemisphere 24.8
Hippocampus, CA1
nTPM: 22.7
2527 Male, age 74, both hemispheres 26.2
1873 Female, age 85, both hemispheres 24.7
2082 Female, age 91, right hemisphere 24.0
2749 Male, age 80, left hemisphere 22.8
2045 Male, age 76, both hemispheres 15.5
Hippocampus, CA2
nTPM: 29.1
1963 Male, age 80, left hemisphere 37.9
2249 Male, age 74, both hemispheres 31.6
2437 Female, age 94, left hemisphere 29.4
1940 Female, age 85, left hemisphere 28.6
2113 Female, age 91, right hemisphere 27.1
1892 Male, age 76, both hemispheres 20.3
Hippocampus, CA3
nTPM: 22.6
1891 Female, age 85, both hemispheres 35.7
1867 Male, age 76, both hemispheres 25.4
2436 Male, age 74, both hemispheres 20.3
2861 Female, age 67, both hemispheres 18.9
2137 Male, age 80, left hemisphere 18.0
2620 Female, age 94, left hemisphere 17.0
Parahippocampal cortex
nTPM: 25.8
2532 Female, age 72, left hemisphere 36.1
1990 Female, age 91, right hemisphere 34.5
2692 Male, age 74, both hemispheres 31.8
2245 Female, age 91, both hemispheres 26.4
2018 Male, age 76, both hemispheres 25.7
1933 Female, age 85, both hemispheres 24.7
1850 Male, age 80, both hemispheres 24.2
2250 Female, age 67, right hemisphere 18.6
2693 Female, age 94, both hemispheres 18.1
2622 Female, age 67, right hemisphere 17.8
Perirhinal gyrus
nTPM: 19.7
2848 Male, age 76, right hemisphere 21.2
1794 Male, age 80, right hemisphere 21.1
2521 Female, age 94, right hemisphere 20.1
1847 Female, age 91, left hemisphere 18.6
1841 Female, age 85, right hemisphere 17.7
Subiculum
nTPM: 37.5
2042 Male, age 76, both hemispheres 49.3
1901 Male, age 80, both hemispheres 45.9
1977 Female, age 85, both hemispheres 38.3
2438 Female, age 94, left hemisphere 33.6
2619 Male, age 74, both hemispheres 29.6
2729 Female, age 91, right hemisphere 28.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 54.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 54.5
Samples: 197

Max nTPM: 216.1
Min nTPM: 4.0
Std nTPM: 39.4
Median nTPM: 44.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 216.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 195.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 194.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 186.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 186.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 179.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 140.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 133.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 131.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 130.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 121.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.7
FF:10153-102I9 76 years, female 36.7
FF:10169-103B7 60 years, female 14.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 8.5
Samples: 4

Max nTPM: 14.8
Min nTPM: 1.6
Sample A Female 14.8
Sample B Female 6.0
Sample C Male 11.7
Sample D Male 1.6
Entorhinal cortex
nTPM: 2.2
Samples: 4

Max nTPM: 3.9
Min nTPM: 1.4
Sample A Female 1.4
Sample B Female 3.9
Sample C Male 1.5
Sample D Male 2.1
Subiculum
nTPM: 2.5
Samples: 4

Max nTPM: 3.5
Min nTPM: 1.7
Sample A Female 3.5
Sample B Female 2.8
Sample C Male 2.0
Sample D Male 1.7
Ventral hippocampus
nTPM: 5.2
Samples: 4

Max nTPM: 7.1
Min nTPM: 2.5
Sample A Female 7.1
Sample B Female 2.5
Sample C Male 5.7
Sample D Male 5.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 0.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.7
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.0
Sample A Male 1.8
Sample B Male 0.8
Sample C Female 0.3
Sample D Female 0.0
Hippocampal formation
nTPM: 0.9
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.2
Sample A Male 1.6
Sample B Male 1.4
Sample C Female 0.3
Sample D Female 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.