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SAMD8
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.8 nTPM
HPA:22.8 nTPM
GTEx:16.4 nTPM
FANTOM5:80.5 Scaled Tags Per Million
Pig:23.7 nTPM
Mouse:23.1 nTPM
Allen mouse:1.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 22.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.3
2288 Male, age 75, left hemisphere 17.7
1854 Male, age 80, left hemisphere 17.2
2290 Female, age 72, unknown 16.5
1857 Female, age 85, left hemisphere 16.4
2481 Female, age 94, left hemisphere 15.8
2846 Female, age 79, unknown 14.4
2289 Male, age 61, right hemisphere 12.7
1781 Male, age 74, unknown 11.9
Claustrum
nTPM: 14.2
2392 Female, age 94, both hemispheres 17.7
2198 Male, age 80, both hemispheres 15.3
2292 Female, age 85, both hemispheres 15.3
2491 Male, age 75, both hemispheres 15.2
1956 Male, age 74, unknown 14.9
2196 Female, age 79, unknown 13.4
2568 Male, age 61, both hemispheres 13.3
2284 Female, age 91, both hemispheres 12.5
2645 Female, age 72, unknown 10.6
Globus pallidus, externus
nTPM: 20.8
1996 Male, age 80, right hemisphere 23.3
2395 Male, age 75, both hemispheres 22.6
2772 Female, age 79, unknown 22.5
2567 Female, age 72, unknown 19.7
2646 Male, age 61, right hemisphere 16.0
Globus pallidus, internus
nTPM: 22.8
2287 Male, age 75, right hemisphere 29.5
2778 Female, age 91, both hemispheres 23.2
2111 Female, age 85, right hemisphere 22.5
1818 Male, age 74, unknown 22.2
2037 Male, age 80, right hemisphere 21.6
2483 Female, age 94, right hemisphere 20.9
2566 Female, age 72, unknown 19.7
Nucleus accumbens
nTPM: 15.9
2286 Male, age 75, left hemisphere 18.5
2391 Female, age 94, left hemisphere 17.5
2824 Male, age 61, right hemisphere 16.8
2698 Female, age 72, unknown 16.5
1806 Female, age 85, left hemisphere 15.5
1856 Female, age 91, right hemisphere 14.7
1783 Male, age 74, unknown 14.2
2732 Male, age 80, right hemisphere 13.8
Nucleus basalis of Meynert
nTPM: 15.4
2569 Male, age 61, both hemispheres 17.4
2393 Male, age 80, right hemisphere 15.8
2821 Male, age 75, both hemispheres 14.9
2484 Female, age 94, left hemisphere 13.3
Nucleus of the diagonal band
nTPM: 15.5
2029 Male, age 61, right hemisphere 17.0
2775 Male, age 80, right hemisphere 16.6
1812 Female, age 91, both hemispheres 16.1
2195 Female, age 85, both hemispheres 14.9
1979 Male, age 74, unknown 13.1
Olfactory tubercle
nTPM: 14.2
1846 Male, age 80, right hemisphere 17.3
2487 Female, age 94, left hemisphere 13.9
2856 Male, age 75, right hemisphere 13.9
1998 Female, age 91, both hemispheres 11.7
Putamen
nTPM: 14.4
1838 Male, age 80, right hemisphere 15.7
2647 Male, age 75, left hemisphere 15.6
2482 Female, age 94, left hemisphere 15.1
1829 Male, age 74, unknown 15.0
1937 Female, age 91, right hemisphere 13.5
2466 Female, age 79, unknown 13.3
2489 Female, age 72, unknown 12.5
Septal nuclei
nTPM: 14.2
2031 Female, age 72, unknown 15.7
2199 Male, age 80, right hemisphere 15.3
2629 Female, age 94, right hemisphere 15.3
2394 Male, age 61, left hemisphere 14.2
2009 Female, age 91, both hemispheres 13.2
1960 Male, age 74, unknown 13.1
2059 Female, age 85, both hemispheres 12.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.6
Samples: 246

Max nTPM: 23.8
Min nTPM: 9.6
Std nTPM: 2.1
Median nTPM: 15.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 23.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 22.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 22.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 21.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 21.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 21.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 21.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 21.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 20.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 20.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 20.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.6
Samples: 246

Max nTPM: 26.7
Min nTPM: 8.9
Std nTPM: 2.5
Median nTPM: 15.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 26.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 25.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 23.3
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 22.8
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 22.7
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 22.7
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 22.5
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 21.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 21.2
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 21.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 20.8
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Brain - Putamen (basal ganglia)
Average nTPM: 16.4
Samples: 205

Max nTPM: 30.8
Min nTPM: 11.3
Std nTPM: 2.6
Median nTPM: 16.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 30.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 25.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 25.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 24.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 23.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 23.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 22.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 22.0
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 21.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 21.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 21.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 62.1
FF:10164-103B2 76 years, female 62.1
Globus pallidus
Scaled Tags Per Million: 78.7
FF:10161-103A8 76 years, female 79.3
FF:10175-103C4 60 years, female 78.1
Nucleus accumbens
Scaled Tags Per Million: 80.5
FF:10037-101F1 23-56 years, mixed 80.5
Putamen
Scaled Tags Per Million: 80.3
FF:10176-103C5 60 years, female 80.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.7
Pig sample Sample description nTPM
Caudate
nTPM: 17.3
Samples: 4

Max nTPM: 18.6
Min nTPM: 15.7
Sample A Female 18.5
Sample B Female 15.7
Sample C Male 18.6
Sample D Male 16.3
Putamen
nTPM: 23.7
Samples: 4

Max nTPM: 29.0
Min nTPM: 17.8
Sample A Female 26.9
Sample B Female 17.8
Sample C Male 29.0
Sample D Male 21.0
Septum
nTPM: 20.4
Samples: 4

Max nTPM: 21.5
Min nTPM: 18.3
Sample A Female 21.4
Sample B Female 18.3
Sample C Male 21.5
Sample D Male 20.5
Ventral pallidum
nTPM: 20.2
Samples: 4

Max nTPM: 21.6
Min nTPM: 19.0
Sample A Female 19.1
Sample B Female 19.0
Sample C Male 21.6
Sample D Male 21.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 23.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.1
Samples: 4

Max nTPM: 25.0
Min nTPM: 21.2
Sample A Male 23.4
Sample B Male 21.2
Sample C Female 25.0
Sample D Female 22.8
Septum
nTPM: 18.2
Samples: 4

Max nTPM: 20.6
Min nTPM: 15.8
Sample A Male 20.3
Sample B Male 16.2
Sample C Female 15.8
Sample D Female 20.6
Ventral forebrain
nTPM: 20.4
Samples: 4

Max nTPM: 22.6
Min nTPM: 16.5
Sample A Male 21.5
Sample B Male 20.8
Sample C Female 16.5
Sample D Female 22.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
69873391 Antisense, RP_050512_01_B09, Mouse strain C57BL/6J (56 days, male) 4.8
77799057 Antisense, RP_070212_03_E03, Mouse strain C57BL/6J (56 days, male) 0.6
70813155 Antisense, RP_050712_03_C11, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 1.5
69873391 Antisense, RP_050512_01_B09, Mouse strain C57BL/6J (56 days, male) 3.5
77799057 Antisense, RP_070212_03_E03, Mouse strain C57BL/6J (56 days, male) 0.8
70813155 Antisense, RP_050712_03_C11, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.