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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:20.9 nTPM
HPA:20.9 nTPM
GTEx:34.3 nTPM
FANTOM5:64.1 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA037648
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 20.0
1857 Female, age 85, left hemisphere 20.8
2481 Female, age 94, left hemisphere 20.8
2290 Female, age 72, unknown 20.7
1854 Male, age 80, left hemisphere 20.1
2288 Male, age 75, left hemisphere 20.0
2846 Female, age 79, unknown 19.5
1781 Male, age 74, unknown 19.4
2289 Male, age 61, right hemisphere 18.6
Claustrum
nTPM: 19.5
2392 Female, age 94, both hemispheres 21.2
2198 Male, age 80, both hemispheres 20.2
2491 Male, age 75, both hemispheres 19.9
2292 Female, age 85, both hemispheres 19.6
2284 Female, age 91, both hemispheres 19.5
1956 Male, age 74, unknown 19.2
2196 Female, age 79, unknown 19.0
2568 Male, age 61, both hemispheres 18.8
2645 Female, age 72, unknown 18.0
Globus pallidus, externus
nTPM: 19.9
2772 Female, age 79, unknown 21.0
2395 Male, age 75, both hemispheres 20.8
1996 Male, age 80, right hemisphere 20.1
2646 Male, age 61, right hemisphere 18.8
2567 Female, age 72, unknown 18.7
Globus pallidus, internus
nTPM: 20.5
2287 Male, age 75, right hemisphere 22.0
2483 Female, age 94, right hemisphere 21.6
2778 Female, age 91, both hemispheres 21.3
2111 Female, age 85, right hemisphere 20.9
2037 Male, age 80, right hemisphere 19.9
1818 Male, age 74, unknown 19.1
2566 Female, age 72, unknown 18.8
Nucleus accumbens
nTPM: 20.7
1806 Female, age 85, left hemisphere 21.4
2286 Male, age 75, left hemisphere 21.4
2824 Male, age 61, right hemisphere 21.4
2732 Male, age 80, right hemisphere 20.9
1783 Male, age 74, unknown 20.3
1856 Female, age 91, right hemisphere 20.2
2391 Female, age 94, left hemisphere 20.2
2698 Female, age 72, unknown 19.8
Nucleus basalis of Meynert
nTPM: 19.3
2393 Male, age 80, right hemisphere 20.3
2484 Female, age 94, left hemisphere 19.5
2821 Male, age 75, both hemispheres 18.8
2569 Male, age 61, both hemispheres 18.7
Nucleus of the diagonal band
nTPM: 20.9
2775 Male, age 80, right hemisphere 21.7
1812 Female, age 91, both hemispheres 21.3
1979 Male, age 74, unknown 21.1
2029 Male, age 61, right hemisphere 20.3
2195 Female, age 85, both hemispheres 20.0
Olfactory tubercle
nTPM: 19.8
2487 Female, age 94, left hemisphere 20.4
1846 Male, age 80, right hemisphere 20.2
1998 Female, age 91, both hemispheres 19.6
2856 Male, age 75, right hemisphere 19.1
Putamen
nTPM: 19.7
1838 Male, age 80, right hemisphere 21.3
1937 Female, age 91, right hemisphere 20.7
2466 Female, age 79, unknown 20.1
1829 Male, age 74, unknown 19.5
2482 Female, age 94, left hemisphere 19.2
2647 Male, age 75, left hemisphere 18.7
2489 Female, age 72, unknown 18.3
Septal nuclei
nTPM: 20.4
2031 Female, age 72, unknown 21.8
1960 Male, age 74, unknown 21.4
2009 Female, age 91, both hemispheres 21.0
2059 Female, age 85, both hemispheres 19.9
2199 Male, age 80, right hemisphere 19.8
2394 Male, age 61, left hemisphere 19.5
2629 Female, age 94, right hemisphere 19.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.6
Samples: 246

Max nTPM: 56.1
Min nTPM: 14.8
Std nTPM: 6.6
Median nTPM: 27.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 56.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 54.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 51.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 49.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 49.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 48.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 47.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 46.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 45.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 44.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 42.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.3
Samples: 246

Max nTPM: 83.5
Min nTPM: 11.9
Std nTPM: 7.8
Median nTPM: 33.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 83.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 63.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 63.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 52.3
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 51.5
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 50.9
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 48.7
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 48.6
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 46.8
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 46.1
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 46.1
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Brain - Putamen (basal ganglia)
Average nTPM: 25.9
Samples: 205

Max nTPM: 45.2
Min nTPM: 14.1
Std nTPM: 5.6
Median nTPM: 25.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 45.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 42.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 40.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 40.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 39.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 38.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 38.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 37.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 37.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 36.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 35.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 51.3
FF:10164-103B2 76 years, female 51.3
Globus pallidus
Scaled Tags Per Million: 43.0
FF:10175-103C4 60 years, female 55.2
FF:10161-103A8 76 years, female 30.8
Nucleus accumbens
Scaled Tags Per Million: 44.1
FF:10037-101F1 23-56 years, mixed 44.1
Putamen
Scaled Tags Per Million: 64.1
FF:10176-103C5 60 years, female 64.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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