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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:90.0 nTPM
HPA:90.0 nTPM
GTEx:47.5 nTPM
FANTOM5:163.1 Scaled Tags Per Million
Mouse:55.4 nTPM
Allen mouse:2.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039871
Glial cells Low
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 90.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.5
2481 Female, age 94, left hemisphere 59.4
2288 Male, age 75, left hemisphere 59.3
1781 Male, age 74, unknown 56.2
1854 Male, age 80, left hemisphere 55.7
2846 Female, age 79, unknown 54.2
2289 Male, age 61, right hemisphere 52.5
2290 Female, age 72, unknown 50.3
1857 Female, age 85, left hemisphere 48.8
Claustrum
nTPM: 61.4
2292 Female, age 85, both hemispheres 80.1
1956 Male, age 74, unknown 75.9
2196 Female, age 79, unknown 67.6
2198 Male, age 80, both hemispheres 59.7
2491 Male, age 75, both hemispheres 59.1
2392 Female, age 94, both hemispheres 56.8
2284 Female, age 91, both hemispheres 52.6
2568 Male, age 61, both hemispheres 51.3
2645 Female, age 72, unknown 49.8
Globus pallidus, externus
nTPM: 85.8
1996 Male, age 80, right hemisphere 101.8
2772 Female, age 79, unknown 88.7
2567 Female, age 72, unknown 85.2
2395 Male, age 75, both hemispheres 76.9
2646 Male, age 61, right hemisphere 76.2
Globus pallidus, internus
nTPM: 90.0
2111 Female, age 85, right hemisphere 109.8
2566 Female, age 72, unknown 93.6
2778 Female, age 91, both hemispheres 92.4
1818 Male, age 74, unknown 91.4
2287 Male, age 75, right hemisphere 84.4
2037 Male, age 80, right hemisphere 83.3
2483 Female, age 94, right hemisphere 75.0
Nucleus accumbens
nTPM: 57.9
2391 Female, age 94, left hemisphere 65.8
2698 Female, age 72, unknown 63.3
2732 Male, age 80, right hemisphere 63.3
2286 Male, age 75, left hemisphere 60.1
1806 Female, age 85, left hemisphere 58.7
1783 Male, age 74, unknown 55.0
1856 Female, age 91, right hemisphere 49.7
2824 Male, age 61, right hemisphere 47.3
Nucleus basalis of Meynert
nTPM: 64.0
2569 Male, age 61, both hemispheres 79.0
2821 Male, age 75, both hemispheres 62.6
2484 Female, age 94, left hemisphere 61.3
2393 Male, age 80, right hemisphere 53.2
Nucleus of the diagonal band
nTPM: 46.5
1812 Female, age 91, both hemispheres 52.7
2029 Male, age 61, right hemisphere 47.5
1979 Male, age 74, unknown 45.0
2775 Male, age 80, right hemisphere 44.4
2195 Female, age 85, both hemispheres 42.6
Olfactory tubercle
nTPM: 49.2
2487 Female, age 94, left hemisphere 51.5
1846 Male, age 80, right hemisphere 50.8
1998 Female, age 91, both hemispheres 48.3
2856 Male, age 75, right hemisphere 46.2
Putamen
nTPM: 57.5
2482 Female, age 94, left hemisphere 71.5
2489 Female, age 72, unknown 64.8
1829 Male, age 74, unknown 57.3
2647 Male, age 75, left hemisphere 56.5
1937 Female, age 91, right hemisphere 54.9
2466 Female, age 79, unknown 50.7
1838 Male, age 80, right hemisphere 46.5
Septal nuclei
nTPM: 49.7
2394 Male, age 61, left hemisphere 62.7
2199 Male, age 80, right hemisphere 59.5
2629 Female, age 94, right hemisphere 48.6
2009 Female, age 91, both hemispheres 46.8
2059 Female, age 85, both hemispheres 46.3
2031 Female, age 72, unknown 43.9
1960 Male, age 74, unknown 39.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.2
Samples: 246

Max nTPM: 98.7
Min nTPM: 5.4
Std nTPM: 13.5
Median nTPM: 32.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 98.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 76.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 73.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 72.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 68.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 67.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 62.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 62.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 61.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 61.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 61.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 26.9
Samples: 246

Max nTPM: 95.5
Min nTPM: 7.8
Std nTPM: 13.0
Median nTPM: 23.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 95.5
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 74.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 71.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 70.6
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 65.8
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 60.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 59.6
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 58.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 58.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 57.6
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 56.3
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Brain - Putamen (basal ganglia)
Average nTPM: 47.5
Samples: 205

Max nTPM: 163.1
Min nTPM: 16.3
Std nTPM: 18.4
Median nTPM: 44.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 163.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 106.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 103.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 93.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 92.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 89.8
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 85.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 85.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 82.7
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 81.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 78.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 163.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 53.7
FF:10164-103B2 76 years, female 53.7
Globus pallidus
Scaled Tags Per Million: 163.1
FF:10175-103C4 60 years, female 163.3
FF:10161-103A8 76 years, female 162.9
Nucleus accumbens
Scaled Tags Per Million: 79.3
FF:10037-101F1 23-56 years, mixed 79.3
Putamen
Scaled Tags Per Million: 43.2
FF:10176-103C5 60 years, female 43.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 55.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 55.4
Samples: 4

Max nTPM: 62.1
Min nTPM: 49.3
Sample A Male 59.6
Sample B Male 62.1
Sample C Female 50.6
Sample D Female 49.3
Septum
nTPM: 50.2
Samples: 4

Max nTPM: 60.6
Min nTPM: 38.2
Sample A Male 38.2
Sample B Male 47.3
Sample C Female 54.7
Sample D Female 60.6
Ventral forebrain
nTPM: 36.9
Samples: 4

Max nTPM: 43.9
Min nTPM: 31.1
Sample A Male 35.8
Sample B Male 31.1
Sample C Female 43.9
Sample D Female 36.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.4
68745114 Antisense, RP_050210_01_C07, Mouse strain C57BL/6J (56 days, male) 2.4
Pallidum
Expression energy: 2.9
68745114 Antisense, RP_050210_01_C07, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.