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L3MBTL2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.6 nTPM
HPA:16.6 nTPM
GTEx:15.8 nTPM
FANTOM5:34.8 Scaled Tags Per Million
Pig:9.6 nTPM
Mouse:23.9 nTPM
Allen mouse:2.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.7
1781 Male, age 74, unknown 16.1
1857 Female, age 85, left hemisphere 15.3
2288 Male, age 75, left hemisphere 15.2
2846 Female, age 79, unknown 15.1
1854 Male, age 80, left hemisphere 14.4
2290 Female, age 72, unknown 14.0
2481 Female, age 94, left hemisphere 14.0
2289 Male, age 61, right hemisphere 13.2
Claustrum
nTPM: 16.6
2568 Male, age 61, both hemispheres 17.7
2198 Male, age 80, both hemispheres 16.9
2284 Female, age 91, both hemispheres 16.8
2196 Female, age 79, unknown 16.7
1956 Male, age 74, unknown 16.5
2292 Female, age 85, both hemispheres 16.5
2491 Male, age 75, both hemispheres 16.5
2645 Female, age 72, unknown 16.5
2392 Female, age 94, both hemispheres 15.2
Globus pallidus, externus
nTPM: 16.3
2567 Female, age 72, unknown 19.1
2772 Female, age 79, unknown 16.6
2646 Male, age 61, right hemisphere 16.2
2395 Male, age 75, both hemispheres 15.9
1996 Male, age 80, right hemisphere 13.5
Globus pallidus, internus
nTPM: 16.5
2111 Female, age 85, right hemisphere 18.6
2778 Female, age 91, both hemispheres 18.3
2566 Female, age 72, unknown 17.9
2287 Male, age 75, right hemisphere 15.9
1818 Male, age 74, unknown 15.4
2483 Female, age 94, right hemisphere 15.2
2037 Male, age 80, right hemisphere 14.5
Nucleus accumbens
nTPM: 15.8
1783 Male, age 74, unknown 17.7
2391 Female, age 94, left hemisphere 16.8
2824 Male, age 61, right hemisphere 16.3
2732 Male, age 80, right hemisphere 16.0
1806 Female, age 85, left hemisphere 15.5
1856 Female, age 91, right hemisphere 15.0
2286 Male, age 75, left hemisphere 15.0
2698 Female, age 72, unknown 14.0
Nucleus basalis of Meynert
nTPM: 14.6
2569 Male, age 61, both hemispheres 15.3
2484 Female, age 94, left hemisphere 14.6
2393 Male, age 80, right hemisphere 14.2
2821 Male, age 75, both hemispheres 14.1
Nucleus of the diagonal band
nTPM: 15.7
2029 Male, age 61, right hemisphere 17.0
2195 Female, age 85, both hemispheres 16.4
2775 Male, age 80, right hemisphere 16.1
1812 Female, age 91, both hemispheres 14.8
1979 Male, age 74, unknown 14.1
Olfactory tubercle
nTPM: 14.9
1998 Female, age 91, both hemispheres 15.8
2487 Female, age 94, left hemisphere 15.0
1846 Male, age 80, right hemisphere 14.9
2856 Male, age 75, right hemisphere 13.7
Putamen
nTPM: 15.3
2647 Male, age 75, left hemisphere 17.2
2466 Female, age 79, unknown 16.7
1829 Male, age 74, unknown 15.6
2482 Female, age 94, left hemisphere 15.2
2489 Female, age 72, unknown 14.7
1937 Female, age 91, right hemisphere 14.4
1838 Male, age 80, right hemisphere 13.6
Septal nuclei
nTPM: 15.1
1960 Male, age 74, unknown 16.7
2059 Female, age 85, both hemispheres 16.1
2031 Female, age 72, unknown 15.7
2629 Female, age 94, right hemisphere 15.2
2199 Male, age 80, right hemisphere 14.6
2009 Female, age 91, both hemispheres 14.2
2394 Male, age 61, left hemisphere 12.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.5
Samples: 246

Max nTPM: 24.2
Min nTPM: 8.6
Std nTPM: 2.9
Median nTPM: 15.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 24.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 23.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 22.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 22.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 22.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 21.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 21.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 21.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 21.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 21.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 21.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.8
Samples: 246

Max nTPM: 24.0
Min nTPM: 7.2
Std nTPM: 3.3
Median nTPM: 15.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 24.0
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 23.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 23.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 22.5
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 22.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 22.0
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 21.7
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 21.7
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 21.7
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 21.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 21.4
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Brain - Putamen (basal ganglia)
Average nTPM: 15.3
Samples: 205

Max nTPM: 22.9
Min nTPM: 8.9
Std nTPM: 2.8
Median nTPM: 15.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 22.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 22.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 22.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 22.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 22.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 22.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 21.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 21.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 21.4
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 21.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 21.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.9
FF:10164-103B2 76 years, female 23.9
Globus pallidus
Scaled Tags Per Million: 16.9
FF:10161-103A8 76 years, female 22.7
FF:10175-103C4 60 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 34.8
FF:10037-101F1 23-56 years, mixed 34.8
Putamen
Scaled Tags Per Million: 24.8
FF:10176-103C5 60 years, female 24.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.6
Pig sample Sample description nTPM
Caudate
nTPM: 9.3
Samples: 4

Max nTPM: 11.2
Min nTPM: 7.0
Sample A Female 7.0
Sample B Female 9.2
Sample C Male 11.2
Sample D Male 9.7
Putamen
nTPM: 9.6
Samples: 4

Max nTPM: 11.5
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 9.2
Sample C Male 10.3
Sample D Male 11.5
Septum
nTPM: 7.2
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.6
Sample A Female 6.7
Sample B Female 7.8
Sample C Male 6.6
Sample D Male 7.6
Ventral pallidum
nTPM: 8.1
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.3
Sample A Female 7.3
Sample B Female 7.8
Sample C Male 8.3
Sample D Male 8.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 23.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.9
Samples: 4

Max nTPM: 25.4
Min nTPM: 22.4
Sample A Male 25.4
Sample B Male 25.3
Sample C Female 22.5
Sample D Female 22.4
Septum
nTPM: 21.3
Samples: 4

Max nTPM: 22.6
Min nTPM: 20.6
Sample A Male 22.6
Sample B Male 20.6
Sample C Female 20.9
Sample D Female 21.2
Ventral forebrain
nTPM: 23.4
Samples: 4

Max nTPM: 25.2
Min nTPM: 21.6
Sample A Male 25.2
Sample B Male 22.9
Sample C Female 21.6
Sample D Female 23.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
67815942 Antisense, RP_040920_02_B06, Mouse strain C57BL/6J (56 days, male) 2.5
Pallidum
Expression energy: 1.8
67815942 Antisense, RP_040920_02_B06, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.