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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.3 nTPM
HPA:7.3 nTPM
GTEx:13.0 nTPM
FANTOM5:29.3 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:22.2 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.0
1827 Male, age 72, unknown 6.2
2411 Female, age 72, unknown 6.2
1870 Female, age 42, unknown 5.7
2219 Male, age 76, both hemispheres 5.6
2019 Male, age 18, unknown 5.2
2666 Male, age 74, left hemisphere 5.2
2828 Female, age 72, unknown 4.8
1833 Male, age 53, unknown 4.2
2586 Male, age 75, left hemisphere 3.8
1830 Male, age 51, unknown 3.5
Dorsal raphe nucleus
nTPM: 5.6
2750 Male, age 76, both hemispheres 7.0
2298 Female, age 72, unknown 5.7
1828 Male, age 53, unknown 5.5
2047 Male, age 72, unknown 5.3
2016 Female, age 72, unknown 4.6
Inferior colliculus
nTPM: 4.0
2097 Female, age 72, unknown 4.8
1890 Male, age 53, unknown 4.2
1848 Female, age 42, unknown 3.7
2849 Male, age 72, unknown 3.2
Median raphe nucleus
nTPM: 7.0
2220 Male, age 76, midline 7.0
Pedunculopontine tegmental nucleus
nTPM: 5.5
1921 Female, age 85, both hemispheres 5.9
2334 Male, age 80, both hemispheres 5.6
2338 Male, age 61, both hemispheres 4.9
Periaquaductal grey, anterior
nTPM: 7.3
1947 Male, age 18, unknown 8.6
1795 Male, age 51, unknown 7.4
2502 Female, age 75, unknown 5.9
Periaquaductal grey, dorsal
nTPM: 4.4
1840 Male, age 53, unknown 4.8
2464 Female, age 72, unknown 4.4
2850 Male, age 76, both hemispheres 4.3
1831 Male, age 72, unknown 4.2
Periaquaductal grey, lateral
nTPM: 4.5
2272 Male, age 74, both hemispheres 4.6
2053 Male, age 18, unknown 4.4
2140 Male, age 76, both hemispheres 4.4
Pretectal area
nTPM: 5.8
1816 Male, age 51, unknown 7.7
2007 Male, age 72, unknown 7.3
1815 Male, age 53, unknown 6.8
1817 Female, age 42, unknown 6.7
1944 Female, age 72, unknown 5.6
2224 Female, age 72, unknown 5.4
2273 Male, age 74, both hemispheres 5.4
2667 Female, age 75, unknown 5.4
2825 Male, age 18, unknown 5.2
2407 Male, age 75, both hemispheres 4.3
2316 Male, age 76, right hemisphere 3.5
Red nucleus
nTPM: 4.8
1821 Female, age 72, unknown 5.9
2725 Female, age 75, unknown 5.9
2588 Male, age 74, left hemisphere 5.7
2503 Female, age 72, unknown 5.2
2823 Male, age 76, right hemisphere 5.0
2584 Male, age 75, left hemisphere 4.8
2769 Male, age 72, unknown 4.5
1904 Male, age 53, unknown 4.4
1865 Male, age 51, unknown 4.3
2785 Male, age 18, unknown 4.2
1954 Female, age 42, unknown 4.1
2227 Male, age 72, unknown 4.1
Substantia nigra
nTPM: 7.2
1851 Male, age 51, unknown 10.1
1916 Female, age 42, unknown 10.0
2241 Male, age 72, unknown 9.4
1941 Male, age 53, unknown 6.8
1889 Female, age 72, unknown 6.4
2409 Female, age 72, unknown 6.4
2699 Male, age 18, unknown 6.3
2590 Female, age 75, unknown 5.6
2583 Male, age 75, right hemisphere 5.5
2665 Male, age 74, both hemispheres 5.2
Superior colliculus
nTPM: 5.0
2668 Female, age 75, unknown 6.4
1796 Male, age 53, unknown 6.0
2261 Male, age 18, unknown 5.5
2587 Male, age 74, left hemisphere 5.4
1895 Male, age 76, right hemisphere 5.2
1839 Male, age 51, unknown 4.9
2087 Female, age 72, unknown 4.9
1913 Female, age 42, unknown 4.4
1995 Male, age 72, unknown 3.8
2664 Male, age 75, both hemispheres 3.7
Ventral tegmental area
nTPM: 6.2
1915 Female, age 42, unknown 7.8
2410 Female, age 72, unknown 7.2
2218 Male, age 76, both hemispheres 6.6
2223 Female, age 72, unknown 5.8
2021 Male, age 53, unknown 4.8
1942 Male, age 51, unknown 4.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.0
Samples: 139

Max nTPM: 32.8
Min nTPM: 6.5
Std nTPM: 4.1
Median nTPM: 11.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 32.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 29.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 28.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 24.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 22.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 22.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 21.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 21.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 19.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 18.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 18.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.3
FF:10158-103A5 76 years, female 29.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.2
Pig sample Sample description nTPM
Midbrain
nTPM: 13.0
Samples: 4

Max nTPM: 15.9
Min nTPM: 10.6
Sample A Female 15.9
Sample B Female 13.7
Sample C Male 11.6
Sample D Male 10.6
Periaqueductal gray
nTPM: 11.3
Samples: 3

Max nTPM: 13.5
Min nTPM: 9.6
Sample B Female 13.5
Sample C Male 9.6
Sample D Male 10.7
Substantia nigra
nTPM: 13.2
Samples: 4

Max nTPM: 13.9
Min nTPM: 12.1
Sample A Female 13.9
Sample B Female 13.6
Sample C Male 12.1
Sample D Male 13.1
Superior colliculi
nTPM: 11.7
Samples: 4

Max nTPM: 12.9
Min nTPM: 10.3
Sample A Female 12.9
Sample B Female 12.0
Sample C Male 11.5
Sample D Male 10.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 22.8
Min nTPM: 21.4
Sample A Male 22.0
Sample B Male 22.5
Sample C Female 21.4
Sample D Female 22.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
68341525 Antisense, RP_041207_01_F12, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas project is funded
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