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PDZD4
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:132.0 nTPM
HPA:132.0 nTPM
GTEx:243.4 nTPM
FANTOM5:133.9 Scaled Tags Per Million
Pig:62.9 nTPM
Mouse:66.6 nTPM
Allen mouse:10.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003878
Glial cells Low
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 132.0
Sample id Sample description nTPM
Hippocampus
nTPM: 130.2
2621 Female, age 67, right hemisphere 161.3
2148 Female, age 91, left hemisphere 143.9
2529 Female, age 94, left hemisphere 132.8
1898 Male, age 80, left hemisphere 122.9
1911 Female, age 85, right hemisphere 115.8
1855 Male, age 76, left hemisphere 104.8
Dentate gyrus
nTPM: 118.6
2531 Female, age 67, both hemispheres 172.8
1927 Female, age 91, both hemispheres 139.1
2530 Female, age 94, left hemisphere 114.6
2528 Male, age 74, both hemispheres 106.0
2010 Male, age 76, both hemispheres 91.6
2246 Female, age 85, both hemispheres 87.6
Entorhinal gyrus
nTPM: 103.3
2613 Female, age 94, left hemisphere 136.3
2686 Male, age 75, right hemisphere 118.9
2764 Male, age 80, right hemisphere 99.7
1787 Male, age 76, left hemisphere 93.4
1938 Female, age 85, left hemisphere 90.5
2117 Female, age 91, right hemisphere 81.0
Hippocampus, CA1
nTPM: 114.0
2749 Male, age 80, left hemisphere 131.5
2527 Male, age 74, both hemispheres 128.1
1873 Female, age 85, both hemispheres 113.1
2082 Female, age 91, right hemisphere 99.9
2045 Male, age 76, both hemispheres 97.6
Hippocampus, CA2
nTPM: 110.7
1963 Male, age 80, left hemisphere 169.2
2113 Female, age 91, right hemisphere 115.8
2437 Female, age 94, left hemisphere 113.9
1892 Male, age 76, both hemispheres 104.2
2249 Male, age 74, both hemispheres 83.8
1940 Female, age 85, left hemisphere 77.6
Hippocampus, CA3
nTPM: 132.0
2861 Female, age 67, both hemispheres 202.0
2620 Female, age 94, left hemisphere 170.2
2137 Male, age 80, left hemisphere 154.7
1867 Male, age 76, both hemispheres 92.0
2436 Male, age 74, both hemispheres 86.5
1891 Female, age 85, both hemispheres 86.4
Parahippocampal cortex
nTPM: 100.9
2245 Female, age 91, both hemispheres 143.8
2622 Female, age 67, right hemisphere 122.8
2250 Female, age 67, right hemisphere 102.3
2693 Female, age 94, both hemispheres 101.4
2018 Male, age 76, both hemispheres 95.0
2532 Female, age 72, left hemisphere 94.1
1850 Male, age 80, both hemispheres 93.0
1933 Female, age 85, both hemispheres 89.0
1990 Female, age 91, right hemisphere 87.1
2692 Male, age 74, both hemispheres 80.2
Perirhinal gyrus
nTPM: 104.9
1794 Male, age 80, right hemisphere 112.8
1847 Female, age 91, left hemisphere 109.0
2521 Female, age 94, right hemisphere 106.5
1841 Female, age 85, right hemisphere 102.7
2848 Male, age 76, right hemisphere 93.8
Subiculum
nTPM: 81.6
2729 Female, age 91, right hemisphere 100.5
1901 Male, age 80, both hemispheres 85.0
2619 Male, age 74, both hemispheres 84.3
1977 Female, age 85, both hemispheres 78.6
2042 Male, age 76, both hemispheres 74.5
2438 Female, age 94, left hemisphere 66.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 243.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 243.4
Samples: 197

Max nTPM: 663.8
Min nTPM: 11.9
Std nTPM: 140.1
Median nTPM: 230.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 663.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 662.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 660.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 600.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 593.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 562.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 546.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 540.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 540.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 536.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 521.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 133.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 133.9
FF:10153-102I9 76 years, female 140.2
FF:10169-103B7 60 years, female 127.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 62.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 50.5
Samples: 4

Max nTPM: 66.1
Min nTPM: 36.1
Sample A Female 66.1
Sample B Female 57.5
Sample C Male 42.4
Sample D Male 36.1
Entorhinal cortex
nTPM: 62.9
Samples: 4

Max nTPM: 79.6
Min nTPM: 47.6
Sample A Female 60.7
Sample B Female 63.7
Sample C Male 79.6
Sample D Male 47.6
Subiculum
nTPM: 53.9
Samples: 4

Max nTPM: 82.1
Min nTPM: 37.2
Sample A Female 82.1
Sample B Female 48.7
Sample C Male 47.7
Sample D Male 37.2
Ventral hippocampus
nTPM: 56.7
Samples: 4

Max nTPM: 70.6
Min nTPM: 47.8
Sample A Female 52.9
Sample B Female 47.8
Sample C Male 70.6
Sample D Male 55.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 66.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 66.6
Samples: 4

Max nTPM: 70.7
Min nTPM: 64.5
Sample A Male 65.1
Sample B Male 66.2
Sample C Female 64.5
Sample D Female 70.7
Hippocampal formation
nTPM: 53.6
Samples: 4

Max nTPM: 63.8
Min nTPM: 47.3
Sample A Male 63.8
Sample B Male 53.5
Sample C Female 47.3
Sample D Female 49.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.1
68844313 Antisense, RP_050222_01_D03, Mouse strain C57BL/6J (56 days, male) 10.1

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