Immune cell - TRBJ1-1 - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	TRBJ1-1
Gene descriptionⁱ Full gene name according to HGNC.	T cell receptor beta joining 1-1
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular

IMMUNE CELL SECTION SUMMARY
Immune cell type expression clusterⁱ The RNA data is used to cluster genes according to their expression across immune cells. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	T-cells - T-cell receptor (mainly)
Immune cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Immune cell enhanced (T-reg)
Immune cell type distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Immune cell lineage specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: lineage enriched, group enriched, lineage enhanced, low lineage specificity and not detected. Lineages include B-cells, T-cells, NK-cells, monocytes, granulocytes and dendritic cells. Read more	Lineage enriched (T-cells)
Immune cell lineage distributionⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Detected in all

IMMUNE CELL TYPE EXPRESSION (RNA)ⁱ

HPA datasetⁱ

Lineage

Expression

Alphabetical

Immune cell type specificity: Immune cell enhanced (T-reg)

Monaco datasetⁱ

Lineage

Expression

Alphabetical

EXPRESSION CLUSTERING & CORRELATIONⁱ

TRBJ1-1 is part of cluster 20 T-cells - T-cell receptor with confidenceⁱ 1
245 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on immune cell RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
TRAV29DV5	T cell receptor alpha variable 29/delta variable 5	0.9568	20
TRBV5-1	T cell receptor beta variable 5-1	0.9217	20
TRAV38-2DV8	T cell receptor alpha variable 38-2/delta variable 8	0.9115	20
TRBV3-1	T cell receptor beta variable 3-1	0.9088	20
TRAV13-1	T cell receptor alpha variable 13-1	0.9066	20
TRAV20	T cell receptor alpha variable 20	0.9048	20
TRAV25	T cell receptor alpha variable 25	0.9030	20
TRAV26-2	T cell receptor alpha variable 26-2	0.9026	20
TRBC1	T cell receptor beta constant 1	0.9003	20
TRAJ54	T cell receptor alpha joining 54	0.8977	20
TRBJ1-2	T cell receptor beta joining 1-2	0.8910	20
TRAJ42	T cell receptor alpha joining 42	0.8874	20
SLC16A10	Solute carrier family 16 member 10	0.8865	20
LEF1	Lymphoid enhancer binding factor 1	0.8830	20
TRAV27	T cell receptor alpha variable 27	0.8821	20