Cell line - CCT6B - The Human Protein Atlas

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CCT6B

SUMMARY

TISSUE

BRAIN

SINGLE CELL

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PATHOLOGY

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CELL LINE

METABOLIC

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	CCT6B
Gene descriptionⁱ Full gene name according to HGNC.	Chaperonin containing TCP1 subunit 6B
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	4

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Cell line expression clusterⁱ The RNA data was used to cluster genes according to their expression across cell lines. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	RPMI-8226 - Immune response (mainly)
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Cell line enhanced (RPMI-8226)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

CELL LINESⁱ

Organ

Expression

Alphabetical

EXPRESSION CLUSTERING & CORRELATIONⁱ

CCT6B is part of cluster 25 RPMI-8226 - Immune response with confidenceⁱ 1
313 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on cell line RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
CYBB	Cytochrome b-245 beta chain	0.8160	25
EVI2A	Ecotropic viral integration site 2A	0.8144	25
CDNF	Cerebral dopamine neurotrophic factor	0.8079	25
CORO7	Coronin 7	0.8047	25
IGLV4-69	Immunoglobulin lambda variable 4-69	0.7955	25
SNAI3	Snail family transcriptional repressor 3	0.7939	25
PLA2G2D	Phospholipase A2 group IID	0.7719	25
IGHG4	Immunoglobulin heavy constant gamma 4 (G4m marker)	0.7717	25
CXCR3	C-X-C motif chemokine receptor 3	0.7664	25
SHISAL2A	Shisa like 2A	0.7652	25
MZB1	Marginal zone B and B1 cell specific protein	0.7634	25
C1QC	Complement C1q C chain	0.7623	25
CCDC112	Coiled-coil domain containing 112	0.7617	25
IGLC3	Immunoglobulin lambda constant 3 (Kern-Oz+ marker)	0.7599	25
IGLV2-14	Immunoglobulin lambda variable 2-14	0.7595	25

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.