Cell line - CLEC4F - The Human Protein Atlas

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CLEC4F

SUMMARY

TISSUE

BRAIN

SINGLE CELL

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PATHOLOGY

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BLOOD

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CELL LINE

METABOLIC

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	CLEC4F
Gene descriptionⁱ Full gene name according to HGNC.	C-type lectin domain family 4 member F
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Membrane
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	2

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Cell line expression clusterⁱ The RNA data was used to cluster genes according to their expression across cell lines. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	AN3-CA - Transcription regulation (mainly)
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Cell line enhanced (AN3-CA)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in single
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

CELL LINESⁱ

Organ

Expression

Alphabetical

EXPRESSION CLUSTERING & CORRELATIONⁱ

CLEC4F is part of cluster 23 AN3-CA - Transcription regulation with confidenceⁱ 1
154 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on cell line RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
CD207	CD207 molecule	0.8694	23
GAGE13	G antigen 13	0.8571	23
AC136616.1		0.8334	23
MGP	Matrix Gla protein	0.8235	23
GAGE12G	G antigen 12G	0.8081	23
PNCK	Pregnancy up-regulated nonubiquitous CaM kinase	0.8028	23
KAZALD1	Kazal type serine peptidase inhibitor domain 1	0.7986	6
GAGE2E	G antigen 2E	0.7951	23
GAGE1	G antigen 1	0.7891	23
SMCO3	Single-pass membrane protein with coiled-coil domains 3	0.7856	23
GLRA2	Glycine receptor alpha 2	0.7725	23
RERG	RAS like estrogen regulated growth inhibitor	0.7725	6
FAM9C	Family with sequence similarity 9 member C	0.7623	23
FGFR2	Fibroblast growth factor receptor 2	0.7613	23
PCDHAC2	Protocadherin alpha subfamily C, 2	0.7569	23

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.