Cell line - LRRC58 - The Human Protein Atlas

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LRRC58

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GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	LRRC58
Gene descriptionⁱ Full gene name according to HGNC.	Leucine rich repeat containing 58
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	1

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Cell line expression clusterⁱ The RNA data was used to cluster genes according to their expression across cell lines. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Non-specific - Cell cycle regulation (mainly)
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

CELL LINESⁱ

Organ

Expression

Alphabetical

EXPRESSION CLUSTERING & CORRELATIONⁱ

LRRC58 is part of cluster 26 Non-specific - Cell cycle regulation with confidenceⁱ 0.99
1622 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on cell line RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
ATG3	Autophagy related 3	0.7263	27
GZF1	GDNF inducible zinc finger protein 1	0.6775	32
POLE3	DNA polymerase epsilon 3, accessory subunit	0.6694	26
TRMT6	TRNA methyltransferase 6	0.6543	26
CMSS1	Cms1 ribosomal small subunit homolog	0.6534	26
TOMM70	Translocase of outer mitochondrial membrane 70	0.6532	26
NAA50	N-alpha-acetyltransferase 50, NatE catalytic subunit	0.6415	27
ZCWPW1	Zinc finger CW-type and PWWP domain containing 1	0.6158	27
CLECL1	C-type lectin like 1	0.5980	27
DKC1	Dyskerin pseudouridine synthase 1	0.5978	27
GABPB2	GA binding protein transcription factor subunit beta 2	0.5927	27
CHRAC1	Chromatin accessibility complex subunit 1	0.5798	26
TPRKB	TP53RK binding protein	0.5743	31
ASDURF	ASNSD1 upstream reading frame	0.5686	16
UBIAD1	UbiA prenyltransferase domain containing 1	0.5638	26

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.