Cell line - TRBV9 - The Human Protein Atlas

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TRBV9

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GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	TRBV9
Gene descriptionⁱ Full gene name according to HGNC.	T cell receptor beta variable 9
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	T-cell receptor genes
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	1

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Cell line expression clusterⁱ The RNA data was used to cluster genes according to their expression across cell lines. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	U-937 - Innate immune response (mainly)
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Group enriched (HL-60, LHCN-M2, U-937)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in some
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at transcript level

CELL LINESⁱ

Organ

Expression

Alphabetical

EXPRESSION CLUSTERING & CORRELATIONⁱ

TRBV9 is part of cluster 32 U-937 - Innate immune response with confidenceⁱ 1
284 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on cell line RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
CLEC5A	C-type lectin domain containing 5A	0.9694	32
IL22RA2	Interleukin 22 receptor subunit alpha 2	0.9656	32
FPR2	Formyl peptide receptor 2	0.9634	32
SERPINB10	Serpin family B member 10	0.9591	32
TRGJP1	T cell receptor gamma joining P1	0.9559	32
SPAG6	Sperm associated antigen 6	0.9557	32
KLRF2	Killer cell lectin like receptor F2	0.9557	32
MYBPC3	Myosin binding protein C3	0.9543	32
COX8C	Cytochrome c oxidase subunit 8C	0.9536	32
LINC02218	Long intergenic non-protein coding RNA 2218	0.9534	32
IL18RAP	Interleukin 18 receptor accessory protein	0.9530	32
TNFSF13B	TNF superfamily member 13b	0.9528	32
CLEC12A	C-type lectin domain family 12 member A	0.9524	32
CEACAM4	CEA cell adhesion molecule 4	0.9508	32
RNASE3	Ribonuclease A family member 3	0.9490	32

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.