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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:46.1 nTPM
HPA:46.1 nTPM
GTEx:61.9 nTPM
FANTOM5:15.0 Scaled Tags Per Million
Pig:14.2 nTPM
Mouse:20.7 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA046265
Glial cells Low
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 46.1
Sample id Sample description nTPM
Hippocampus
nTPM: 46.1
2529 Female, age 94, left hemisphere 51.6
1898 Male, age 80, left hemisphere 47.4
2148 Female, age 91, left hemisphere 45.8
1855 Male, age 76, left hemisphere 44.0
1911 Female, age 85, right hemisphere 43.9
2621 Female, age 67, right hemisphere 43.8
Dentate gyrus
nTPM: 45.0
2530 Female, age 94, left hemisphere 50.6
2531 Female, age 67, both hemispheres 45.8
2010 Male, age 76, both hemispheres 44.4
2528 Male, age 74, both hemispheres 44.3
1927 Female, age 91, both hemispheres 43.1
2246 Female, age 85, both hemispheres 41.8
Entorhinal gyrus
nTPM: 44.5
2764 Male, age 80, right hemisphere 48.3
2117 Female, age 91, right hemisphere 47.1
1787 Male, age 76, left hemisphere 44.2
1938 Female, age 85, left hemisphere 43.5
2686 Male, age 75, right hemisphere 42.6
2613 Female, age 94, left hemisphere 41.5
Hippocampus, CA1
nTPM: 43.9
2749 Male, age 80, left hemisphere 52.7
2527 Male, age 74, both hemispheres 45.0
1873 Female, age 85, both hemispheres 43.0
2045 Male, age 76, both hemispheres 42.6
2082 Female, age 91, right hemisphere 36.4
Hippocampus, CA2
nTPM: 44.7
1963 Male, age 80, left hemisphere 50.4
1892 Male, age 76, both hemispheres 46.3
2437 Female, age 94, left hemisphere 45.7
2249 Male, age 74, both hemispheres 42.6
1940 Female, age 85, left hemisphere 42.0
2113 Female, age 91, right hemisphere 41.3
Hippocampus, CA3
nTPM: 44.3
2137 Male, age 80, left hemisphere 47.8
2861 Female, age 67, both hemispheres 45.9
1867 Male, age 76, both hemispheres 45.7
2620 Female, age 94, left hemisphere 43.2
1891 Female, age 85, both hemispheres 41.8
2436 Male, age 74, both hemispheres 41.7
Parahippocampal cortex
nTPM: 41.6
2245 Female, age 91, both hemispheres 45.9
2532 Female, age 72, left hemisphere 43.3
1990 Female, age 91, right hemisphere 42.9
2018 Male, age 76, both hemispheres 42.8
1933 Female, age 85, both hemispheres 42.2
1850 Male, age 80, both hemispheres 41.4
2250 Female, age 67, right hemisphere 41.1
2622 Female, age 67, right hemisphere 41.1
2692 Male, age 74, both hemispheres 39.3
2693 Female, age 94, both hemispheres 36.2
Perirhinal gyrus
nTPM: 41.6
1794 Male, age 80, right hemisphere 45.3
1847 Female, age 91, left hemisphere 41.6
2521 Female, age 94, right hemisphere 41.6
2848 Male, age 76, right hemisphere 40.0
1841 Female, age 85, right hemisphere 39.7
Subiculum
nTPM: 43.1
1901 Male, age 80, both hemispheres 45.8
1977 Female, age 85, both hemispheres 44.8
2042 Male, age 76, both hemispheres 43.6
2729 Female, age 91, right hemisphere 43.0
2619 Male, age 74, both hemispheres 42.8
2438 Female, age 94, left hemisphere 38.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 61.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 61.9
Samples: 197

Max nTPM: 112.4
Min nTPM: 19.6
Std nTPM: 14.9
Median nTPM: 59.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 112.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 111.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 109.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 107.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 106.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 97.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 97.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 97.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 94.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 93.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 89.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.0
FF:10153-102I9 76 years, female 16.4
FF:10169-103B7 60 years, female 13.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 14.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 14.2
Samples: 4

Max nTPM: 19.9
Min nTPM: 9.7
Sample A Female 19.9
Sample B Female 13.7
Sample C Male 13.5
Sample D Male 9.7
Entorhinal cortex
nTPM: 13.2
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.1
Sample A Female 12.3
Sample B Female 15.5
Sample C Male 14.9
Sample D Male 10.1
Subiculum
nTPM: 12.2
Samples: 4

Max nTPM: 16.7
Min nTPM: 10.4
Sample A Female 16.7
Sample B Female 10.4
Sample C Male 11.1
Sample D Male 10.6
Ventral hippocampus
nTPM: 13.4
Samples: 4

Max nTPM: 15.3
Min nTPM: 9.6
Sample A Female 14.7
Sample B Female 9.6
Sample C Male 15.3
Sample D Male 13.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 20.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 20.1
Samples: 4

Max nTPM: 23.5
Min nTPM: 18.2
Sample A Male 18.2
Sample B Male 23.5
Sample C Female 20.3
Sample D Female 18.3
Hippocampal formation
nTPM: 20.7
Samples: 4

Max nTPM: 23.6
Min nTPM: 19.2
Sample A Male 23.6
Sample B Male 20.2
Sample C Female 19.2
Sample D Female 19.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
68546094 Antisense, RP_050120_02_A01, Mouse strain C57BL/6J (56 days, male) 0.0

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