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SS18L2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.8 nTPM
HPA:27.8 nTPM
GTEx:32.4 nTPM
FANTOM5:31.5 Scaled Tags Per Million
Pig:45.5 nTPM
Mouse:81.0 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.0
2411 Female, age 72, unknown 28.8
2019 Male, age 18, unknown 28.4
1870 Female, age 42, unknown 27.7
1827 Male, age 72, unknown 27.6
1833 Male, age 53, unknown 27.3
1830 Male, age 51, unknown 27.2
2666 Male, age 74, left hemisphere 26.2
2219 Male, age 76, both hemispheres 26.0
2828 Female, age 72, unknown 25.9
2586 Male, age 75, left hemisphere 25.4
Dorsal raphe nucleus
nTPM: 26.9
2750 Male, age 76, both hemispheres 27.9
2298 Female, age 72, unknown 27.1
2047 Male, age 72, unknown 26.8
1828 Male, age 53, unknown 26.7
2016 Female, age 72, unknown 26.2
Inferior colliculus
nTPM: 27.3
2097 Female, age 72, unknown 28.1
1848 Female, age 42, unknown 27.7
1890 Male, age 53, unknown 27.1
2849 Male, age 72, unknown 26.4
Median raphe nucleus
nTPM: 27.0
2220 Male, age 76, midline 27.0
Pedunculopontine tegmental nucleus
nTPM: 27.8
1921 Female, age 85, both hemispheres 28.3
2334 Male, age 80, both hemispheres 27.9
2338 Male, age 61, both hemispheres 27.3
Periaquaductal grey, anterior
nTPM: 27.1
2502 Female, age 75, unknown 27.6
1947 Male, age 18, unknown 27.5
1795 Male, age 51, unknown 26.1
Periaquaductal grey, dorsal
nTPM: 26.5
2464 Female, age 72, unknown 27.2
1840 Male, age 53, unknown 26.6
1831 Male, age 72, unknown 26.3
2850 Male, age 76, both hemispheres 25.8
Periaquaductal grey, lateral
nTPM: 26.7
2272 Male, age 74, both hemispheres 27.3
2053 Male, age 18, unknown 26.7
2140 Male, age 76, both hemispheres 26.1
Pretectal area
nTPM: 27.3
1817 Female, age 42, unknown 27.8
2316 Male, age 76, right hemisphere 27.7
2667 Female, age 75, unknown 27.7
2007 Male, age 72, unknown 27.5
2224 Female, age 72, unknown 27.5
1815 Male, age 53, unknown 27.3
1816 Male, age 51, unknown 27.2
1944 Female, age 72, unknown 27.1
2273 Male, age 74, both hemispheres 27.0
2825 Male, age 18, unknown 26.6
2407 Male, age 75, both hemispheres 26.4
Red nucleus
nTPM: 27.7
1821 Female, age 72, unknown 28.7
1954 Female, age 42, unknown 28.6
1865 Male, age 51, unknown 28.5
2227 Male, age 72, unknown 28.0
2769 Male, age 72, unknown 27.9
1904 Male, age 53, unknown 27.7
2823 Male, age 76, right hemisphere 27.6
2785 Male, age 18, unknown 27.5
2588 Male, age 74, left hemisphere 27.2
2503 Female, age 72, unknown 27.0
2584 Male, age 75, left hemisphere 26.6
2725 Female, age 75, unknown 26.5
Substantia nigra
nTPM: 26.6
1889 Female, age 72, unknown 27.8
2409 Female, age 72, unknown 27.4
1941 Male, age 53, unknown 27.1
2583 Male, age 75, right hemisphere 26.9
2590 Female, age 75, unknown 26.8
1851 Male, age 51, unknown 26.6
2241 Male, age 72, unknown 26.5
1916 Female, age 42, unknown 26.3
2665 Male, age 74, both hemispheres 25.7
2699 Male, age 18, unknown 25.4
Superior colliculus
nTPM: 27.1
1895 Male, age 76, right hemisphere 27.8
1839 Male, age 51, unknown 27.7
2261 Male, age 18, unknown 27.6
1913 Female, age 42, unknown 27.5
1796 Male, age 53, unknown 27.1
2587 Male, age 74, left hemisphere 27.1
2668 Female, age 75, unknown 27.0
1995 Male, age 72, unknown 26.9
2087 Female, age 72, unknown 26.4
2664 Male, age 75, both hemispheres 26.3
Ventral tegmental area
nTPM: 26.9
2410 Female, age 72, unknown 28.7
2223 Female, age 72, unknown 27.5
1915 Female, age 42, unknown 26.7
1942 Male, age 51, unknown 26.3
2021 Male, age 53, unknown 26.1
2218 Male, age 76, both hemispheres 26.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.4
Samples: 139

Max nTPM: 64.6
Min nTPM: 20.5
Std nTPM: 7.9
Median nTPM: 31.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 64.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 63.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 58.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 57.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 51.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 50.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 50.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 47.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 46.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 45.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 43.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.5
FF:10158-103A5 76 years, female 31.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.5
Pig sample Sample description nTPM
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 44.0
Min nTPM: 36.2
Sample A Female 42.5
Sample B Female 42.0
Sample C Male 36.2
Sample D Male 44.0
Periaqueductal gray
nTPM: 33.4
Samples: 3

Max nTPM: 36.1
Min nTPM: 31.3
Sample B Female 31.3
Sample C Male 36.1
Sample D Male 32.8
Substantia nigra
nTPM: 45.5
Samples: 4

Max nTPM: 63.6
Min nTPM: 26.7
Sample A Female 63.6
Sample B Female 43.2
Sample C Male 48.5
Sample D Male 26.7
Superior colliculi
nTPM: 45.5
Samples: 4

Max nTPM: 57.1
Min nTPM: 39.2
Sample A Female 57.1
Sample B Female 43.2
Sample C Male 42.5
Sample D Male 39.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 81.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.0
Samples: 4

Max nTPM: 89.5
Min nTPM: 75.5
Sample A Male 77.0
Sample B Male 75.5
Sample C Female 81.8
Sample D Female 89.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
68545450 Antisense, RP_050120_01_A03, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.