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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:169.5 nTPM
HPA:169.5 nTPM
GTEx:169.0 nTPM
FANTOM5:443.3 Scaled Tags Per Million
Pig:182.7 nTPM
Mouse:125.7 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 169.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 150.2
2019 Male, age 18, unknown 166.7
2411 Female, age 72, unknown 157.3
1870 Female, age 42, unknown 152.1
2586 Male, age 75, left hemisphere 150.8
1827 Male, age 72, unknown 150.3
1830 Male, age 51, unknown 149.5
2666 Male, age 74, left hemisphere 149.3
1833 Male, age 53, unknown 147.8
2828 Female, age 72, unknown 141.5
2219 Male, age 76, both hemispheres 136.4
Dorsal raphe nucleus
nTPM: 151.1
2750 Male, age 76, both hemispheres 153.0
2298 Female, age 72, unknown 151.7
1828 Male, age 53, unknown 151.4
2016 Female, age 72, unknown 150.0
2047 Male, age 72, unknown 149.6
Inferior colliculus
nTPM: 147.4
1890 Male, age 53, unknown 154.3
2097 Female, age 72, unknown 152.2
1848 Female, age 42, unknown 145.0
2849 Male, age 72, unknown 138.1
Median raphe nucleus
nTPM: 147.5
2220 Male, age 76, midline 147.5
Pedunculopontine tegmental nucleus
nTPM: 150.7
2338 Male, age 61, both hemispheres 154.8
2334 Male, age 80, both hemispheres 153.2
1921 Female, age 85, both hemispheres 144.0
Periaquaductal grey, anterior
nTPM: 151.5
2502 Female, age 75, unknown 167.0
1947 Male, age 18, unknown 150.2
1795 Male, age 51, unknown 137.4
Periaquaductal grey, dorsal
nTPM: 142.8
1831 Male, age 72, unknown 148.5
2464 Female, age 72, unknown 143.1
1840 Male, age 53, unknown 141.7
2850 Male, age 76, both hemispheres 137.8
Periaquaductal grey, lateral
nTPM: 138.7
2272 Male, age 74, both hemispheres 143.1
2053 Male, age 18, unknown 141.5
2140 Male, age 76, both hemispheres 131.3
Pretectal area
nTPM: 150.2
1817 Female, age 42, unknown 164.8
1815 Male, age 53, unknown 162.3
1816 Male, age 51, unknown 161.0
2007 Male, age 72, unknown 161.0
1944 Female, age 72, unknown 160.7
2224 Female, age 72, unknown 146.1
2273 Male, age 74, both hemispheres 145.0
2407 Male, age 75, both hemispheres 144.6
2825 Male, age 18, unknown 137.8
2667 Female, age 75, unknown 137.7
2316 Male, age 76, right hemisphere 130.8
Red nucleus
nTPM: 157.6
1821 Female, age 72, unknown 176.4
1865 Male, age 51, unknown 163.7
2503 Female, age 72, unknown 162.7
2725 Female, age 75, unknown 159.9
2785 Male, age 18, unknown 159.3
1954 Female, age 42, unknown 158.5
1904 Male, age 53, unknown 157.0
2584 Male, age 75, left hemisphere 153.6
2823 Male, age 76, right hemisphere 152.9
2588 Male, age 74, left hemisphere 150.5
2769 Male, age 72, unknown 148.9
2227 Male, age 72, unknown 148.0
Substantia nigra
nTPM: 169.5
1916 Female, age 42, unknown 184.7
2241 Male, age 72, unknown 180.8
2409 Female, age 72, unknown 180.2
1851 Male, age 51, unknown 177.1
1941 Male, age 53, unknown 169.1
2699 Male, age 18, unknown 167.0
1889 Female, age 72, unknown 166.4
2590 Female, age 75, unknown 163.1
2665 Male, age 74, both hemispheres 158.1
2583 Male, age 75, right hemisphere 148.6
Superior colliculus
nTPM: 148.5
2587 Male, age 74, left hemisphere 164.5
2087 Female, age 72, unknown 151.9
1995 Male, age 72, unknown 150.2
2668 Female, age 75, unknown 148.8
1913 Female, age 42, unknown 148.1
1895 Male, age 76, right hemisphere 147.2
1839 Male, age 51, unknown 145.1
2664 Male, age 75, both hemispheres 143.5
1796 Male, age 53, unknown 143.3
2261 Male, age 18, unknown 142.7
Ventral tegmental area
nTPM: 155.6
2410 Female, age 72, unknown 166.5
1915 Female, age 42, unknown 163.0
2218 Male, age 76, both hemispheres 157.3
2223 Female, age 72, unknown 152.1
1942 Male, age 51, unknown 149.8
2021 Male, age 53, unknown 144.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 169.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 169.0
Samples: 139

Max nTPM: 277.7
Min nTPM: 113.2
Std nTPM: 33.2
Median nTPM: 163.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 277.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 273.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 263.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 259.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 242.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 239.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 237.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 232.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 232.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 230.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 226.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 443.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 443.3
FF:10158-103A5 76 years, female 443.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 182.7
Pig sample Sample description nTPM
Midbrain
nTPM: 180.5
Samples: 4

Max nTPM: 219.6
Min nTPM: 152.7
Sample A Female 219.6
Sample B Female 176.5
Sample C Male 173.0
Sample D Male 152.7
Periaqueductal gray
nTPM: 140.1
Samples: 3

Max nTPM: 146.4
Min nTPM: 130.1
Sample B Female 146.4
Sample C Male 143.8
Sample D Male 130.1
Substantia nigra
nTPM: 164.6
Samples: 4

Max nTPM: 200.6
Min nTPM: 137.3
Sample A Female 200.6
Sample B Female 164.8
Sample C Male 155.6
Sample D Male 137.3
Superior colliculi
nTPM: 182.7
Samples: 4

Max nTPM: 198.6
Min nTPM: 167.8
Sample A Female 196.6
Sample B Female 167.8
Sample C Male 198.6
Sample D Male 167.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 125.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 125.7
Samples: 4

Max nTPM: 133.9
Min nTPM: 121.0
Sample A Male 121.0
Sample B Male 123.4
Sample C Female 133.9
Sample D Female 124.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
72182999 Antisense, RP_050927_03_B03, Mouse strain C57BL/6J (56 days, male) 12.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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