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SCMH1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA:16.1 nTPM
GTEx:15.4 nTPM
FANTOM5:19.3 Scaled Tags Per Million
Pig:12.1 nTPM
Mouse:34.8 nTPM
Allen mouse:1.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Hippocampus
nTPM: 14.2
2621 Female, age 67, right hemisphere 16.5
2529 Female, age 94, left hemisphere 15.2
2148 Female, age 91, left hemisphere 14.0
1911 Female, age 85, right hemisphere 13.8
1855 Male, age 76, left hemisphere 13.4
1898 Male, age 80, left hemisphere 12.1
Dentate gyrus
nTPM: 12.9
2531 Female, age 67, both hemispheres 15.6
2246 Female, age 85, both hemispheres 14.1
1927 Female, age 91, both hemispheres 12.9
2530 Female, age 94, left hemisphere 12.8
2528 Male, age 74, both hemispheres 11.4
2010 Male, age 76, both hemispheres 10.9
Entorhinal gyrus
nTPM: 16.1
2686 Male, age 75, right hemisphere 19.0
2613 Female, age 94, left hemisphere 18.4
1938 Female, age 85, left hemisphere 15.9
2764 Male, age 80, right hemisphere 15.3
1787 Male, age 76, left hemisphere 15.1
2117 Female, age 91, right hemisphere 13.1
Hippocampus, CA1
nTPM: 13.2
2527 Male, age 74, both hemispheres 14.6
2749 Male, age 80, left hemisphere 13.9
2082 Female, age 91, right hemisphere 13.2
1873 Female, age 85, both hemispheres 12.6
2045 Male, age 76, both hemispheres 11.8
Hippocampus, CA2
nTPM: 12.5
2437 Female, age 94, left hemisphere 15.1
2113 Female, age 91, right hemisphere 13.1
1963 Male, age 80, left hemisphere 12.5
1892 Male, age 76, both hemispheres 11.9
1940 Female, age 85, left hemisphere 11.7
2249 Male, age 74, both hemispheres 10.7
Hippocampus, CA3
nTPM: 14.5
2861 Female, age 67, both hemispheres 17.8
2137 Male, age 80, left hemisphere 15.6
2436 Male, age 74, both hemispheres 15.2
2620 Female, age 94, left hemisphere 13.6
1891 Female, age 85, both hemispheres 12.9
1867 Male, age 76, both hemispheres 11.6
Parahippocampal cortex
nTPM: 15.4
2622 Female, age 67, right hemisphere 18.4
2245 Female, age 91, both hemispheres 17.5
2693 Female, age 94, both hemispheres 16.5
2692 Male, age 74, both hemispheres 15.9
2532 Female, age 72, left hemisphere 15.5
1933 Female, age 85, both hemispheres 15.3
1850 Male, age 80, both hemispheres 14.8
2250 Female, age 67, right hemisphere 14.1
1990 Female, age 91, right hemisphere 13.6
2018 Male, age 76, both hemispheres 12.8
Perirhinal gyrus
nTPM: 14.9
2848 Male, age 76, right hemisphere 16.3
1847 Female, age 91, left hemisphere 15.3
1841 Female, age 85, right hemisphere 15.1
1794 Male, age 80, right hemisphere 14.1
2521 Female, age 94, right hemisphere 13.8
Subiculum
nTPM: 14.6
2438 Female, age 94, left hemisphere 19.0
2619 Male, age 74, both hemispheres 15.4
1977 Female, age 85, both hemispheres 14.5
1901 Male, age 80, both hemispheres 13.3
2729 Female, age 91, right hemisphere 12.7
2042 Male, age 76, both hemispheres 12.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.4
Samples: 197

Max nTPM: 32.1
Min nTPM: 7.3
Std nTPM: 4.8
Median nTPM: 14.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 32.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 29.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 27.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 27.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 27.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 26.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 26.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 25.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 25.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 25.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 24.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 19.3
FF:10153-102I9 76 years, female 21.8
FF:10169-103B7 60 years, female 16.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 10.2
Samples: 4

Max nTPM: 10.7
Min nTPM: 9.7
Sample A Female 10.7
Sample B Female 9.7
Sample C Male 10.3
Sample D Male 10.2
Entorhinal cortex
nTPM: 12.2
Samples: 4

Max nTPM: 12.6
Min nTPM: 11.9
Sample A Female 12.1
Sample B Female 11.9
Sample C Male 12.6
Sample D Male 12.0
Subiculum
nTPM: 12.1
Samples: 4

Max nTPM: 14.0
Min nTPM: 10.9
Sample A Female 14.0
Sample B Female 11.4
Sample C Male 12.0
Sample D Male 10.9
Ventral hippocampus
nTPM: 11.8
Samples: 4

Max nTPM: 14.9
Min nTPM: 10.3
Sample A Female 10.3
Sample B Female 11.0
Sample C Male 14.9
Sample D Male 10.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 34.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 34.8
Samples: 4

Max nTPM: 37.5
Min nTPM: 31.8
Sample A Male 34.6
Sample B Male 31.8
Sample C Female 35.4
Sample D Female 37.5
Hippocampal formation
nTPM: 32.7
Samples: 4

Max nTPM: 33.8
Min nTPM: 31.8
Sample A Male 32.0
Sample B Male 33.0
Sample C Female 31.8
Sample D Female 33.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.0
68148760 Antisense, RP_041116_02_C04, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

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