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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:101.9 nTPM
HPA:101.9 nTPM
GTEx:111.1 nTPM
FANTOM5:150.8 Scaled Tags Per Million
Pig:6.0 nTPM
Mouse:2.4 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 101.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.2
2411 Female, age 72, unknown 90.9
2019 Male, age 18, unknown 89.6
1830 Male, age 51, unknown 88.6
1833 Male, age 53, unknown 81.4
2828 Female, age 72, unknown 78.5
2586 Male, age 75, left hemisphere 78.4
1870 Female, age 42, unknown 78.1
1827 Male, age 72, unknown 55.7
2666 Male, age 74, left hemisphere 53.6
2219 Male, age 76, both hemispheres 46.8
Dorsal raphe nucleus
nTPM: 54.3
2750 Male, age 76, both hemispheres 97.2
2016 Female, age 72, unknown 58.6
1828 Male, age 53, unknown 48.3
2298 Female, age 72, unknown 35.4
2047 Male, age 72, unknown 31.9
Inferior colliculus
nTPM: 44.1
1848 Female, age 42, unknown 48.6
1890 Male, age 53, unknown 45.9
2849 Male, age 72, unknown 43.7
2097 Female, age 72, unknown 38.2
Median raphe nucleus
nTPM: 39.0
2220 Male, age 76, midline 39.0
Pedunculopontine tegmental nucleus
nTPM: 58.4
2334 Male, age 80, both hemispheres 66.0
2338 Male, age 61, both hemispheres 58.7
1921 Female, age 85, both hemispheres 50.6
Periaquaductal grey, anterior
nTPM: 46.3
2502 Female, age 75, unknown 48.3
1947 Male, age 18, unknown 46.6
1795 Male, age 51, unknown 44.0
Periaquaductal grey, dorsal
nTPM: 38.8
2464 Female, age 72, unknown 58.9
1831 Male, age 72, unknown 47.6
1840 Male, age 53, unknown 27.7
2850 Male, age 76, both hemispheres 21.2
Periaquaductal grey, lateral
nTPM: 42.9
2053 Male, age 18, unknown 51.4
2272 Male, age 74, both hemispheres 48.7
2140 Male, age 76, both hemispheres 28.6
Pretectal area
nTPM: 54.5
2316 Male, age 76, right hemisphere 79.3
2667 Female, age 75, unknown 74.9
1815 Male, age 53, unknown 68.0
2407 Male, age 75, both hemispheres 61.2
2273 Male, age 74, both hemispheres 54.4
2007 Male, age 72, unknown 52.2
1817 Female, age 42, unknown 52.0
2825 Male, age 18, unknown 49.1
1944 Female, age 72, unknown 38.2
2224 Female, age 72, unknown 37.2
1816 Male, age 51, unknown 32.5
Red nucleus
nTPM: 101.9
2823 Male, age 76, right hemisphere 137.1
1904 Male, age 53, unknown 121.7
2503 Female, age 72, unknown 113.9
2227 Male, age 72, unknown 112.9
2769 Male, age 72, unknown 112.9
1865 Male, age 51, unknown 110.9
2785 Male, age 18, unknown 103.0
1821 Female, age 72, unknown 100.1
2588 Male, age 74, left hemisphere 98.4
1954 Female, age 42, unknown 91.7
2584 Male, age 75, left hemisphere 67.0
2725 Female, age 75, unknown 52.9
Substantia nigra
nTPM: 53.3
2583 Male, age 75, right hemisphere 80.8
2409 Female, age 72, unknown 75.7
1851 Male, age 51, unknown 66.3
2590 Female, age 75, unknown 52.8
2699 Male, age 18, unknown 52.7
1889 Female, age 72, unknown 51.0
1916 Female, age 42, unknown 40.6
1941 Male, age 53, unknown 39.5
2241 Male, age 72, unknown 37.8
2665 Male, age 74, both hemispheres 35.8
Superior colliculus
nTPM: 66.7
1995 Male, age 72, unknown 103.6
1913 Female, age 42, unknown 90.1
2668 Female, age 75, unknown 76.8
1895 Male, age 76, right hemisphere 69.8
1839 Male, age 51, unknown 66.1
2587 Male, age 74, left hemisphere 63.7
1796 Male, age 53, unknown 59.9
2664 Male, age 75, both hemispheres 50.8
2087 Female, age 72, unknown 45.6
2261 Male, age 18, unknown 41.1
Ventral tegmental area
nTPM: 60.7
2223 Female, age 72, unknown 77.1
2410 Female, age 72, unknown 68.6
2021 Male, age 53, unknown 59.5
1915 Female, age 42, unknown 56.8
1942 Male, age 51, unknown 56.6
2218 Male, age 76, both hemispheres 45.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 111.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.1
Samples: 139

Max nTPM: 367.4
Min nTPM: 29.4
Std nTPM: 62.4
Median nTPM: 92.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 367.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 328.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 316.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 285.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 274.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 271.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 241.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 236.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 221.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 214.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 214.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 150.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 150.8
FF:10158-103A5 76 years, female 150.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.0
Pig sample Sample description nTPM
Midbrain
nTPM: 2.4
Samples: 4

Max nTPM: 5.0
Min nTPM: 1.3
Sample A Female 5.0
Sample B Female 1.4
Sample C Male 1.7
Sample D Male 1.3
Periaqueductal gray
nTPM: 1.5
Samples: 3

Max nTPM: 1.8
Min nTPM: 1.1
Sample B Female 1.1
Sample C Male 1.8
Sample D Male 1.7
Substantia nigra
nTPM: 6.0
Samples: 4

Max nTPM: 14.7
Min nTPM: 2.5
Sample A Female 3.8
Sample B Female 14.7
Sample C Male 2.5
Sample D Male 3.1
Superior colliculi
nTPM: 6.0
Samples: 4

Max nTPM: 13.1
Min nTPM: 2.1
Sample A Female 6.1
Sample B Female 13.1
Sample C Male 2.1
Sample D Male 2.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.4
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.9
Sample A Male 2.8
Sample B Male 1.9
Sample C Female 2.5
Sample D Female 2.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
79544848 Antisense, RP_071101_01_A09, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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