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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.2 nTPM
HPA:13.2 nTPM
GTEx:10.3 nTPM
FANTOM5:29.9 Scaled Tags Per Million
Pig:1.1 nTPM
Mouse:14.0 nTPM
Allen mouse:1.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.2
Sample id Sample description nTPM
Hippocampus
nTPM: 9.1
1898 Male, age 80, left hemisphere 10.4
2621 Female, age 67, right hemisphere 10.1
2529 Female, age 94, left hemisphere 9.5
1855 Male, age 76, left hemisphere 8.7
2148 Female, age 91, left hemisphere 8.5
1911 Female, age 85, right hemisphere 7.5
Dentate gyrus
nTPM: 8.9
2530 Female, age 94, left hemisphere 10.8
2528 Male, age 74, both hemispheres 9.1
1927 Female, age 91, both hemispheres 9.0
2246 Female, age 85, both hemispheres 9.0
2531 Female, age 67, both hemispheres 8.4
2010 Male, age 76, both hemispheres 7.3
Entorhinal gyrus
nTPM: 12.1
2764 Male, age 80, right hemisphere 15.3
2613 Female, age 94, left hemisphere 14.9
1787 Male, age 76, left hemisphere 12.8
1938 Female, age 85, left hemisphere 10.4
2117 Female, age 91, right hemisphere 9.8
2686 Male, age 75, right hemisphere 9.2
Hippocampus, CA1
nTPM: 9.2
2749 Male, age 80, left hemisphere 12.8
2082 Female, age 91, right hemisphere 10.8
2527 Male, age 74, both hemispheres 10.0
1873 Female, age 85, both hemispheres 7.6
2045 Male, age 76, both hemispheres 4.6
Hippocampus, CA2
nTPM: 10.7
2437 Female, age 94, left hemisphere 13.0
1892 Male, age 76, both hemispheres 11.6
2113 Female, age 91, right hemisphere 10.8
2249 Male, age 74, both hemispheres 10.5
1963 Male, age 80, left hemisphere 9.5
1940 Female, age 85, left hemisphere 8.5
Hippocampus, CA3
nTPM: 9.9
2436 Male, age 74, both hemispheres 13.9
2137 Male, age 80, left hemisphere 11.4
2861 Female, age 67, both hemispheres 9.4
1867 Male, age 76, both hemispheres 9.1
1891 Female, age 85, both hemispheres 7.9
2620 Female, age 94, left hemisphere 7.6
Parahippocampal cortex
nTPM: 11.8
2622 Female, age 67, right hemisphere 13.7
1990 Female, age 91, right hemisphere 13.0
1850 Male, age 80, both hemispheres 12.8
2532 Female, age 72, left hemisphere 12.8
2250 Female, age 67, right hemisphere 11.5
2245 Female, age 91, both hemispheres 11.2
1933 Female, age 85, both hemispheres 11.1
2692 Male, age 74, both hemispheres 10.7
2018 Male, age 76, both hemispheres 10.4
2693 Female, age 94, both hemispheres 10.3
Perirhinal gyrus
nTPM: 13.2
1794 Male, age 80, right hemisphere 15.1
1847 Female, age 91, left hemisphere 13.5
2848 Male, age 76, right hemisphere 13.3
2521 Female, age 94, right hemisphere 12.5
1841 Female, age 85, right hemisphere 11.7
Subiculum
nTPM: 10.7
2438 Female, age 94, left hemisphere 13.3
2619 Male, age 74, both hemispheres 12.1
1977 Female, age 85, both hemispheres 11.7
1901 Male, age 80, both hemispheres 9.7
2729 Female, age 91, right hemisphere 9.2
2042 Male, age 76, both hemispheres 8.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.3
Samples: 197

Max nTPM: 20.1
Min nTPM: 4.0
Std nTPM: 2.1
Median nTPM: 10.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 20.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 15.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 15.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 15.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 15.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 14.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 14.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 14.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 14.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 14.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 14.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 29.9
FF:10153-102I9 76 years, female 33.6
FF:10169-103B7 60 years, female 26.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 1.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 1.1
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.8
Sample A Female 1.4
Sample B Female 1.3
Sample C Male 1.0
Sample D Male 0.8
Entorhinal cortex
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Female 0.6
Sample B Female 0.5
Sample C Male 0.8
Sample D Male 0.8
Subiculum
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Female 0.7
Sample B Female 0.5
Sample C Male 0.7
Sample D Male 0.4
Ventral hippocampus
nTPM: 1.1
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.7
Sample A Female 0.7
Sample B Female 1.0
Sample C Male 1.0
Sample D Male 1.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 13.9
Samples: 4

Max nTPM: 15.9
Min nTPM: 11.5
Sample A Male 14.7
Sample B Male 13.6
Sample C Female 11.5
Sample D Female 15.9
Hippocampal formation
nTPM: 13.0
Samples: 4

Max nTPM: 16.8
Min nTPM: 10.7
Sample A Male 10.7
Sample B Male 12.0
Sample C Female 12.3
Sample D Female 16.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.7
77620239 Antisense, RP_070129_03_B11, Mouse strain C57BL/6J (56 days, male) 1.7

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