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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.6 nTPM
HPA:32.6 nTPM
GTEx:16.3 nTPM
FANTOM5:0.9 Scaled Tags Per Million
Pig:17.8 nTPM
Mouse:38.9 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.3
2219 Male, age 76, both hemispheres 30.7
1833 Male, age 53, unknown 10.1
1830 Male, age 51, unknown 8.3
2586 Male, age 75, left hemisphere 8.0
1827 Male, age 72, unknown 7.4
2411 Female, age 72, unknown 6.1
1870 Female, age 42, unknown 4.1
2828 Female, age 72, unknown 3.3
2019 Male, age 18, unknown 2.6
2666 Male, age 74, left hemisphere 2.5
Dorsal raphe nucleus
nTPM: 5.5
1828 Male, age 53, unknown 7.1
2016 Female, age 72, unknown 7.1
2047 Male, age 72, unknown 6.3
2298 Female, age 72, unknown 4.6
2750 Male, age 76, both hemispheres 2.6
Inferior colliculus
nTPM: 24.4
1890 Male, age 53, unknown 32.8
2097 Female, age 72, unknown 29.4
2849 Male, age 72, unknown 18.1
1848 Female, age 42, unknown 17.4
Median raphe nucleus
nTPM: 3.2
2220 Male, age 76, midline 3.2
Pedunculopontine tegmental nucleus
nTPM: 10.0
1921 Female, age 85, both hemispheres 11.7
2334 Male, age 80, both hemispheres 9.5
2338 Male, age 61, both hemispheres 8.9
Periaquaductal grey, anterior
nTPM: 9.1
2502 Female, age 75, unknown 18.7
1947 Male, age 18, unknown 7.7
1795 Male, age 51, unknown 1.0
Periaquaductal grey, dorsal
nTPM: 6.6
2464 Female, age 72, unknown 8.8
1831 Male, age 72, unknown 8.2
1840 Male, age 53, unknown 7.6
2850 Male, age 76, both hemispheres 1.9
Periaquaductal grey, lateral
nTPM: 2.5
2140 Male, age 76, both hemispheres 3.7
2053 Male, age 18, unknown 3.2
2272 Male, age 74, both hemispheres 0.5
Pretectal area
nTPM: 2.1
2825 Male, age 18, unknown 7.5
2316 Male, age 76, right hemisphere 5.5
2407 Male, age 75, both hemispheres 4.4
2224 Female, age 72, unknown 2.5
2667 Female, age 75, unknown 1.6
2007 Male, age 72, unknown 0.7
1816 Male, age 51, unknown 0.4
1944 Female, age 72, unknown 0.3
1815 Male, age 53, unknown 0.0
1817 Female, age 42, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
Red nucleus
nTPM: 10.7
1821 Female, age 72, unknown 20.9
2769 Male, age 72, unknown 15.8
2227 Male, age 72, unknown 15.6
1954 Female, age 42, unknown 14.3
1865 Male, age 51, unknown 11.1
1904 Male, age 53, unknown 10.8
2823 Male, age 76, right hemisphere 9.8
2503 Female, age 72, unknown 8.4
2584 Male, age 75, left hemisphere 7.7
2588 Male, age 74, left hemisphere 7.0
2725 Female, age 75, unknown 6.0
2785 Male, age 18, unknown 1.0
Substantia nigra
nTPM: 32.6
1916 Female, age 42, unknown 62.5
2699 Male, age 18, unknown 59.9
2665 Male, age 74, both hemispheres 45.3
1941 Male, age 53, unknown 37.0
1851 Male, age 51, unknown 34.7
2241 Male, age 72, unknown 32.7
2409 Female, age 72, unknown 23.0
2590 Female, age 75, unknown 12.5
2583 Male, age 75, right hemisphere 9.7
1889 Female, age 72, unknown 9.1
Superior colliculus
nTPM: 4.9
1895 Male, age 76, right hemisphere 14.1
2664 Male, age 75, both hemispheres 8.3
1839 Male, age 51, unknown 7.7
2668 Female, age 75, unknown 5.7
1796 Male, age 53, unknown 4.5
2587 Male, age 74, left hemisphere 4.2
2261 Male, age 18, unknown 2.7
2087 Female, age 72, unknown 2.2
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
Ventral tegmental area
nTPM: 19.7
1915 Female, age 42, unknown 34.1
2410 Female, age 72, unknown 28.7
2218 Male, age 76, both hemispheres 26.5
1942 Male, age 51, unknown 18.9
2021 Male, age 53, unknown 5.3
2223 Female, age 72, unknown 4.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.3
Samples: 139

Max nTPM: 67.7
Min nTPM: 0.4
Std nTPM: 15.4
Median nTPM: 10.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 67.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 65.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 61.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 58.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 58.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 49.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 47.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 46.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 44.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 41.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 40.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.9
FF:10158-103A5 76 years, female 0.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.8
Pig sample Sample description nTPM
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 25.1
Min nTPM: 7.3
Sample A Female 7.3
Sample B Female 9.5
Sample C Male 12.1
Sample D Male 25.1
Periaqueductal gray
nTPM: 7.6
Samples: 3

Max nTPM: 9.4
Min nTPM: 5.9
Sample B Female 7.5
Sample C Male 9.4
Sample D Male 5.9
Substantia nigra
nTPM: 16.2
Samples: 4

Max nTPM: 26.1
Min nTPM: 6.2
Sample A Female 22.5
Sample B Female 10.0
Sample C Male 26.1
Sample D Male 6.2
Superior colliculi
nTPM: 17.8
Samples: 4

Max nTPM: 24.9
Min nTPM: 6.2
Sample A Female 24.9
Sample B Female 6.2
Sample C Male 16.6
Sample D Male 23.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.9
Samples: 4

Max nTPM: 42.7
Min nTPM: 32.6
Sample A Male 32.6
Sample B Male 41.0
Sample C Female 42.7
Sample D Female 39.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
69236610 Antisense, RP_050329_04_A08, Mouse strain C57BL/6J (56 days, male) 7.3
70560276 Antisense, RP_050329_04_A08, Mouse strain C57BL/6J (56 days, male) 5.7
77924344 Antisense, RP_070219_01_F10, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.