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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:32.4 nTPM
HPA:32.4 nTPM
GTEx:34.1 nTPM
FANTOM5:78.8 Scaled Tags Per Million
Pig:49.4 nTPM
Mouse:123.3 nTPM
Allen mouse:5.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA037721Antibody HPA037722
Glial cells Not detectedNot detected
Neuronal cells LowLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 32.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.0
2481 Female, age 94, left hemisphere 35.4
2846 Female, age 79, unknown 32.7
2288 Male, age 75, left hemisphere 32.0
2290 Female, age 72, unknown 31.6
1781 Male, age 74, unknown 31.2
1857 Female, age 85, left hemisphere 29.9
1854 Male, age 80, left hemisphere 29.2
2289 Male, age 61, right hemisphere 26.0
Claustrum
nTPM: 27.8
2392 Female, age 94, both hemispheres 32.2
1956 Male, age 74, unknown 29.3
2198 Male, age 80, both hemispheres 29.3
2196 Female, age 79, unknown 28.9
2491 Male, age 75, both hemispheres 27.8
2284 Female, age 91, both hemispheres 27.2
2568 Male, age 61, both hemispheres 25.8
2292 Female, age 85, both hemispheres 24.7
2645 Female, age 72, unknown 24.6
Globus pallidus, externus
nTPM: 29.3
2395 Male, age 75, both hemispheres 33.0
2772 Female, age 79, unknown 32.9
1996 Male, age 80, right hemisphere 30.4
2646 Male, age 61, right hemisphere 26.1
2567 Female, age 72, unknown 24.1
Globus pallidus, internus
nTPM: 30.4
2287 Male, age 75, right hemisphere 35.7
2483 Female, age 94, right hemisphere 34.0
2778 Female, age 91, both hemispheres 32.2
1818 Male, age 74, unknown 30.8
2037 Male, age 80, right hemisphere 29.7
2111 Female, age 85, right hemisphere 26.0
2566 Female, age 72, unknown 24.4
Nucleus accumbens
nTPM: 31.5
2286 Male, age 75, left hemisphere 34.7
1856 Female, age 91, right hemisphere 33.6
2391 Female, age 94, left hemisphere 33.1
1783 Male, age 74, unknown 32.0
2698 Female, age 72, unknown 31.7
1806 Female, age 85, left hemisphere 30.2
2824 Male, age 61, right hemisphere 30.0
2732 Male, age 80, right hemisphere 26.8
Nucleus basalis of Meynert
nTPM: 29.3
2821 Male, age 75, both hemispheres 30.7
2484 Female, age 94, left hemisphere 30.4
2393 Male, age 80, right hemisphere 29.4
2569 Male, age 61, both hemispheres 26.5
Nucleus of the diagonal band
nTPM: 32.4
1812 Female, age 91, both hemispheres 35.6
2775 Male, age 80, right hemisphere 34.3
2029 Male, age 61, right hemisphere 32.8
2195 Female, age 85, both hemispheres 30.8
1979 Male, age 74, unknown 28.6
Olfactory tubercle
nTPM: 30.4
1846 Male, age 80, right hemisphere 33.8
1998 Female, age 91, both hemispheres 31.8
2856 Male, age 75, right hemisphere 28.2
2487 Female, age 94, left hemisphere 27.9
Putamen
nTPM: 29.6
2482 Female, age 94, left hemisphere 32.8
1937 Female, age 91, right hemisphere 31.2
1829 Male, age 74, unknown 30.9
2466 Female, age 79, unknown 30.8
1838 Male, age 80, right hemisphere 30.1
2647 Male, age 75, left hemisphere 27.1
2489 Female, age 72, unknown 24.0
Septal nuclei
nTPM: 30.9
2031 Female, age 72, unknown 38.1
2009 Female, age 91, both hemispheres 32.5
2629 Female, age 94, right hemisphere 31.6
1960 Male, age 74, unknown 31.3
2394 Male, age 61, left hemisphere 28.8
2199 Male, age 80, right hemisphere 27.6
2059 Female, age 85, both hemispheres 26.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.7
Samples: 246

Max nTPM: 70.3
Min nTPM: 18.1
Std nTPM: 6.4
Median nTPM: 31.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 70.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 61.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 55.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 54.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 52.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 50.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 50.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 49.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 46.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 46.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 45.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.1
Samples: 246

Max nTPM: 56.2
Min nTPM: 11.6
Std nTPM: 7.4
Median nTPM: 33.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 56.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 56.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 54.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 53.9
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 50.0
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 49.2
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 49.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 49.1
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 48.9
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 48.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 47.9
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Brain - Putamen (basal ganglia)
Average nTPM: 31.0
Samples: 205

Max nTPM: 52.0
Min nTPM: 16.1
Std nTPM: 5.6
Median nTPM: 30.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 52.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 50.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 47.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 47.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 42.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 41.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 40.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 40.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 40.5
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 40.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 40.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 61.0
FF:10164-103B2 76 years, female 61.0
Globus pallidus
Scaled Tags Per Million: 46.3
FF:10175-103C4 60 years, female 47.3
FF:10161-103A8 76 years, female 45.3
Nucleus accumbens
Scaled Tags Per Million: 78.8
FF:10037-101F1 23-56 years, mixed 78.8
Putamen
Scaled Tags Per Million: 67.9
FF:10176-103C5 60 years, female 67.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 49.4
Pig sample Sample description nTPM
Caudate
nTPM: 39.8
Samples: 4

Max nTPM: 42.1
Min nTPM: 37.5
Sample A Female 38.9
Sample B Female 40.5
Sample C Male 42.1
Sample D Male 37.5
Putamen
nTPM: 49.4
Samples: 4

Max nTPM: 65.2
Min nTPM: 42.6
Sample A Female 46.7
Sample B Female 43.0
Sample C Male 65.2
Sample D Male 42.6
Septum
nTPM: 48.5
Samples: 4

Max nTPM: 53.7
Min nTPM: 40.7
Sample A Female 53.6
Sample B Female 45.9
Sample C Male 53.7
Sample D Male 40.7
Ventral pallidum
nTPM: 43.2
Samples: 4

Max nTPM: 48.4
Min nTPM: 37.3
Sample A Female 43.1
Sample B Female 48.4
Sample C Male 43.8
Sample D Male 37.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 123.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 120.9
Samples: 4

Max nTPM: 130.8
Min nTPM: 115.2
Sample A Male 117.9
Sample B Male 115.2
Sample C Female 130.8
Sample D Female 119.8
Septum
nTPM: 82.8
Samples: 4

Max nTPM: 89.8
Min nTPM: 69.0
Sample A Male 83.5
Sample B Male 89.8
Sample C Female 88.7
Sample D Female 69.0
Ventral forebrain
nTPM: 123.3
Samples: 4

Max nTPM: 131.4
Min nTPM: 114.0
Sample A Male 124.5
Sample B Male 114.0
Sample C Female 131.4
Sample D Female 123.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.7
67978386 Antisense, RP_040923_01_A07, Mouse strain C57BL/6J (56 days, male) 5.7
Pallidum
Expression energy: 3.1
67978386 Antisense, RP_040923_01_A07, Mouse strain C57BL/6J (56 days, male) 3.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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