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RTN4R
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.7 nTPM
HPA:12.7 nTPM
GTEx:25.0 nTPM
FANTOM5:3.8 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:57.2 nTPM
Allen mouse:11.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.7
Sample id Sample description nTPM
Hippocampus
nTPM: 4.6
1898 Male, age 80, left hemisphere 8.1
2148 Female, age 91, left hemisphere 8.0
2621 Female, age 67, right hemisphere 5.2
1855 Male, age 76, left hemisphere 5.0
1911 Female, age 85, right hemisphere 1.1
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 5.8
2531 Female, age 67, both hemispheres 19.7
2528 Male, age 74, both hemispheres 5.5
1927 Female, age 91, both hemispheres 4.8
2246 Female, age 85, both hemispheres 4.5
2010 Male, age 76, both hemispheres 0.4
2530 Female, age 94, left hemisphere 0.0
Entorhinal gyrus
nTPM: 2.5
2764 Male, age 80, right hemisphere 10.9
2686 Male, age 75, right hemisphere 2.8
1787 Male, age 76, left hemisphere 1.6
1938 Female, age 85, left hemisphere 0.0
2117 Female, age 91, right hemisphere 0.0
2613 Female, age 94, left hemisphere 0.0
Hippocampus, CA1
nTPM: 8.6
2749 Male, age 80, left hemisphere 21.6
2082 Female, age 91, right hemisphere 8.2
2045 Male, age 76, both hemispheres 6.5
2527 Male, age 74, both hemispheres 3.6
1873 Female, age 85, both hemispheres 3.1
Hippocampus, CA2
nTPM: 3.4
1940 Female, age 85, left hemisphere 12.4
2113 Female, age 91, right hemisphere 5.2
2249 Male, age 74, both hemispheres 2.3
1963 Male, age 80, left hemisphere 0.3
1892 Male, age 76, both hemispheres 0.0
2437 Female, age 94, left hemisphere 0.0
Hippocampus, CA3
nTPM: 11.3
2137 Male, age 80, left hemisphere 29.1
2861 Female, age 67, both hemispheres 21.3
2620 Female, age 94, left hemisphere 17.8
1867 Male, age 76, both hemispheres 0.0
1891 Female, age 85, both hemispheres 0.0
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 7.4
2622 Female, age 67, right hemisphere 15.4
2245 Female, age 91, both hemispheres 11.9
2693 Female, age 94, both hemispheres 11.3
2532 Female, age 72, left hemisphere 10.5
1850 Male, age 80, both hemispheres 7.9
1933 Female, age 85, both hemispheres 7.6
2250 Female, age 67, right hemisphere 7.3
2018 Male, age 76, both hemispheres 2.1
1990 Female, age 91, right hemisphere 0.0
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 12.7
1794 Male, age 80, right hemisphere 25.1
2521 Female, age 94, right hemisphere 17.4
1841 Female, age 85, right hemisphere 12.5
1847 Female, age 91, left hemisphere 8.5
2848 Male, age 76, right hemisphere 0.0
Subiculum
nTPM: 2.1
2729 Female, age 91, right hemisphere 6.5
1977 Female, age 85, both hemispheres 3.3
1901 Male, age 80, both hemispheres 2.6
2619 Male, age 74, both hemispheres 0.4
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.0
Samples: 197

Max nTPM: 79.8
Min nTPM: 2.5
Std nTPM: 14.8
Median nTPM: 22.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 79.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 71.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 64.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 62.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 59.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 57.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 55.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 54.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 52.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 52.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 51.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 3.8
FF:10169-103B7 60 years, female 4.1
FF:10153-102I9 76 years, female 3.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 16.7
Samples: 4

Max nTPM: 21.1
Min nTPM: 11.3
Sample A Female 21.1
Sample B Female 20.2
Sample C Male 11.3
Sample D Male 14.3
Entorhinal cortex
nTPM: 28.9
Samples: 4

Max nTPM: 32.0
Min nTPM: 24.1
Sample A Female 32.0
Sample B Female 24.1
Sample C Male 31.9
Sample D Male 27.4
Subiculum
nTPM: 15.1
Samples: 4

Max nTPM: 23.2
Min nTPM: 11.7
Sample A Female 23.2
Sample B Female 12.0
Sample C Male 11.7
Sample D Male 13.4
Ventral hippocampus
nTPM: 14.7
Samples: 4

Max nTPM: 17.2
Min nTPM: 11.2
Sample A Female 16.3
Sample B Female 11.2
Sample C Male 17.2
Sample D Male 13.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 57.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 57.2
Samples: 4

Max nTPM: 67.8
Min nTPM: 44.1
Sample A Male 60.8
Sample B Male 67.8
Sample C Female 44.1
Sample D Female 56.1
Hippocampal formation
nTPM: 50.0
Samples: 4

Max nTPM: 55.0
Min nTPM: 40.6
Sample A Male 40.6
Sample B Male 55.0
Sample C Female 55.0
Sample D Female 49.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.8
69012647 Antisense, RP_050309_01_B11, Mouse strain C57BL/6J (56 days, male) 12.1
72080145 Antisense, RP_051017_03_C10, Mouse strain C57BL/6J (56 days, male) 11.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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