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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni
Consensus:351.2 nTPM
HPA:351.2 nTPM
GTEx:395.7 nTPM
FANTOM5:486.9 Scaled Tags Per Million
Pig:74.5 nTPM
Mouse:385.4 nTPM
Allen mouse:8.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038149Antibody HPA038150
Glial cells HighHigh
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 351.2
Sample id Sample description nTPM
Hippocampus
nTPM: 346.7
2529 Female, age 94, left hemisphere 368.7
1911 Female, age 85, right hemisphere 358.1
2621 Female, age 67, right hemisphere 349.8
1855 Male, age 76, left hemisphere 341.1
1898 Male, age 80, left hemisphere 339.2
2148 Female, age 91, left hemisphere 323.1
Dentate gyrus
nTPM: 351.2
2530 Female, age 94, left hemisphere 495.1
2010 Male, age 76, both hemispheres 355.9
2531 Female, age 67, both hemispheres 345.4
1927 Female, age 91, both hemispheres 311.4
2246 Female, age 85, both hemispheres 307.7
2528 Male, age 74, both hemispheres 291.9
Entorhinal gyrus
nTPM: 341.6
2686 Male, age 75, right hemisphere 432.2
2117 Female, age 91, right hemisphere 350.5
2764 Male, age 80, right hemisphere 324.0
1938 Female, age 85, left hemisphere 318.7
2613 Female, age 94, left hemisphere 313.3
1787 Male, age 76, left hemisphere 310.7
Hippocampus, CA1
nTPM: 334.6
2749 Male, age 80, left hemisphere 389.1
2045 Male, age 76, both hemispheres 348.1
1873 Female, age 85, both hemispheres 318.0
2082 Female, age 91, right hemisphere 316.1
2527 Male, age 74, both hemispheres 301.7
Hippocampus, CA2
nTPM: 325.6
2437 Female, age 94, left hemisphere 352.1
1963 Male, age 80, left hemisphere 346.1
1940 Female, age 85, left hemisphere 325.2
2113 Female, age 91, right hemisphere 314.8
1892 Male, age 76, both hemispheres 309.9
2249 Male, age 74, both hemispheres 305.6
Hippocampus, CA3
nTPM: 331.3
2137 Male, age 80, left hemisphere 413.1
2861 Female, age 67, both hemispheres 338.7
1867 Male, age 76, both hemispheres 334.2
1891 Female, age 85, both hemispheres 331.5
2620 Female, age 94, left hemisphere 314.8
2436 Male, age 74, both hemispheres 255.6
Parahippocampal cortex
nTPM: 315.5
2692 Male, age 74, both hemispheres 351.4
2245 Female, age 91, both hemispheres 345.9
2622 Female, age 67, right hemisphere 336.6
2532 Female, age 72, left hemisphere 335.3
2018 Male, age 76, both hemispheres 324.0
1850 Male, age 80, both hemispheres 312.8
1933 Female, age 85, both hemispheres 312.3
1990 Female, age 91, right hemisphere 296.9
2693 Female, age 94, both hemispheres 270.3
2250 Female, age 67, right hemisphere 269.6
Perirhinal gyrus
nTPM: 293.4
2848 Male, age 76, right hemisphere 310.2
1841 Female, age 85, right hemisphere 305.6
1794 Male, age 80, right hemisphere 300.3
1847 Female, age 91, left hemisphere 291.7
2521 Female, age 94, right hemisphere 259.3
Subiculum
nTPM: 348.5
2042 Male, age 76, both hemispheres 396.4
1901 Male, age 80, both hemispheres 385.3
2438 Female, age 94, left hemisphere 370.6
1977 Female, age 85, both hemispheres 323.8
2619 Male, age 74, both hemispheres 310.0
2729 Female, age 91, right hemisphere 305.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 395.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 395.7
Samples: 197

Max nTPM: 1358.5
Min nTPM: 109.1
Std nTPM: 166.2
Median nTPM: 355.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1358.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 1062.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 930.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 930.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 831.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 809.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 797.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 763.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 731.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 714.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 710.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 486.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 486.9
FF:10169-103B7 60 years, female 491.7
FF:10153-102I9 76 years, female 482.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 74.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 74.4
Samples: 4

Max nTPM: 101.2
Min nTPM: 49.4
Sample A Female 101.2
Sample B Female 76.3
Sample C Male 70.8
Sample D Male 49.4
Entorhinal cortex
nTPM: 38.8
Samples: 4

Max nTPM: 42.7
Min nTPM: 33.3
Sample A Female 41.1
Sample B Female 42.7
Sample C Male 38.0
Sample D Male 33.3
Subiculum
nTPM: 41.5
Samples: 4

Max nTPM: 49.8
Min nTPM: 36.2
Sample A Female 49.8
Sample B Female 38.1
Sample C Male 41.9
Sample D Male 36.2
Ventral hippocampus
nTPM: 66.4
Samples: 4

Max nTPM: 102.5
Min nTPM: 41.6
Sample A Female 54.9
Sample B Female 41.6
Sample C Male 66.4
Sample D Male 102.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 385.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 300.5
Samples: 4

Max nTPM: 322.0
Min nTPM: 277.1
Sample A Male 322.0
Sample B Male 291.5
Sample C Female 311.5
Sample D Female 277.1
Hippocampal formation
nTPM: 385.4
Samples: 4

Max nTPM: 421.1
Min nTPM: 348.7
Sample A Male 380.8
Sample B Male 390.8
Sample C Female 421.1
Sample D Female 348.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.3
68845598 Antisense, RP_050224_02_B05, Mouse strain C57BL/6J (56 days, male) 8.8
71587919 Antisense, RP_050725_03_G05, Mouse strain C57BL/6J (56 days, male) 7.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.