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VPS13D
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:15.8 nTPM
HPA:15.8 nTPM
GTEx:13.2 nTPM
FANTOM5:50.7 Scaled Tags Per Million
Pig:16.4 nTPM
Mouse:13.5 nTPM
Allen mouse:7.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051621
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 15.8
Sample id Sample description nTPM
Hippocampus
nTPM: 14.4
1898 Male, age 80, left hemisphere 15.9
2148 Female, age 91, left hemisphere 14.8
1855 Male, age 76, left hemisphere 14.7
2621 Female, age 67, right hemisphere 14.1
2529 Female, age 94, left hemisphere 13.5
1911 Female, age 85, right hemisphere 13.2
Dentate gyrus
nTPM: 13.6
1927 Female, age 91, both hemispheres 15.9
2246 Female, age 85, both hemispheres 13.7
2528 Male, age 74, both hemispheres 13.4
2010 Male, age 76, both hemispheres 13.0
2531 Female, age 67, both hemispheres 12.8
2530 Female, age 94, left hemisphere 12.6
Entorhinal gyrus
nTPM: 13.8
1938 Female, age 85, left hemisphere 14.3
2613 Female, age 94, left hemisphere 14.3
2686 Male, age 75, right hemisphere 14.3
2764 Male, age 80, right hemisphere 14.1
2117 Female, age 91, right hemisphere 12.9
1787 Male, age 76, left hemisphere 12.7
Hippocampus, CA1
nTPM: 15.8
2749 Male, age 80, left hemisphere 21.7
1873 Female, age 85, both hemispheres 16.3
2527 Male, age 74, both hemispheres 14.0
2045 Male, age 76, both hemispheres 13.9
2082 Female, age 91, right hemisphere 12.9
Hippocampus, CA2
nTPM: 14.1
1963 Male, age 80, left hemisphere 17.5
1892 Male, age 76, both hemispheres 16.4
2113 Female, age 91, right hemisphere 13.3
1940 Female, age 85, left hemisphere 12.9
2249 Male, age 74, both hemispheres 12.7
2437 Female, age 94, left hemisphere 11.8
Hippocampus, CA3
nTPM: 15.3
2137 Male, age 80, left hemisphere 18.4
1867 Male, age 76, both hemispheres 15.5
2620 Female, age 94, left hemisphere 15.5
1891 Female, age 85, both hemispheres 14.7
2861 Female, age 67, both hemispheres 14.1
2436 Male, age 74, both hemispheres 13.7
Parahippocampal cortex
nTPM: 14.2
1850 Male, age 80, both hemispheres 17.4
2622 Female, age 67, right hemisphere 15.4
1933 Female, age 85, both hemispheres 14.4
2692 Male, age 74, both hemispheres 14.4
1990 Female, age 91, right hemisphere 14.1
2693 Female, age 94, both hemispheres 14.1
2532 Female, age 72, left hemisphere 13.3
2250 Female, age 67, right hemisphere 13.2
2018 Male, age 76, both hemispheres 12.8
2245 Female, age 91, both hemispheres 12.8
Perirhinal gyrus
nTPM: 15.2
1841 Female, age 85, right hemisphere 16.1
1794 Male, age 80, right hemisphere 16.0
1847 Female, age 91, left hemisphere 15.9
2848 Male, age 76, right hemisphere 14.4
2521 Female, age 94, right hemisphere 13.7
Subiculum
nTPM: 13.6
1901 Male, age 80, both hemispheres 15.6
2729 Female, age 91, right hemisphere 14.3
1977 Female, age 85, both hemispheres 14.1
2619 Male, age 74, both hemispheres 14.0
2438 Female, age 94, left hemisphere 12.4
2042 Male, age 76, both hemispheres 11.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.2
Samples: 197

Max nTPM: 24.9
Min nTPM: 3.6
Std nTPM: 3.3
Median nTPM: 12.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 24.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 21.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 21.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 21.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 21.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 20.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 20.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 20.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 20.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 19.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 19.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 50.7
FF:10169-103B7 60 years, female 52.3
FF:10153-102I9 76 years, female 49.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 14.5
Samples: 4

Max nTPM: 15.7
Min nTPM: 12.4
Sample A Female 14.7
Sample B Female 15.7
Sample C Male 15.3
Sample D Male 12.4
Entorhinal cortex
nTPM: 16.4
Samples: 4

Max nTPM: 17.1
Min nTPM: 15.3
Sample A Female 16.5
Sample B Female 15.3
Sample C Male 17.1
Sample D Male 16.7
Subiculum
nTPM: 16.1
Samples: 4

Max nTPM: 19.1
Min nTPM: 13.7
Sample A Female 19.1
Sample B Female 15.0
Sample C Male 16.4
Sample D Male 13.7
Ventral hippocampus
nTPM: 14.8
Samples: 4

Max nTPM: 17.2
Min nTPM: 12.3
Sample A Female 12.9
Sample B Female 12.3
Sample C Male 17.2
Sample D Male 16.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 13.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 13.5
Samples: 4

Max nTPM: 17.9
Min nTPM: 11.4
Sample A Male 12.5
Sample B Male 11.4
Sample C Female 12.0
Sample D Female 17.9
Hippocampal formation
nTPM: 10.7
Samples: 4

Max nTPM: 13.8
Min nTPM: 7.8
Sample A Male 7.8
Sample B Male 12.4
Sample C Female 13.8
Sample D Female 8.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.9
70302998 Antisense, RP_050609_01_D03, Mouse strain C57BL/6J (56 days, male) 7.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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