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AP5M1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.0 nTPM
HPA:9.0 nTPM
GTEx:8.7 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:19.2 nTPM
Mouse:10.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.2
2411 Female, age 72, unknown 9.6
2019 Male, age 18, unknown 9.5
1833 Male, age 53, unknown 8.1
2219 Male, age 76, both hemispheres 7.8
1870 Female, age 42, unknown 7.6
1830 Male, age 51, unknown 7.4
1827 Male, age 72, unknown 6.7
2586 Male, age 75, left hemisphere 5.7
2666 Male, age 74, left hemisphere 5.3
2828 Female, age 72, unknown 4.3
Dorsal raphe nucleus
nTPM: 7.9
1828 Male, age 53, unknown 8.9
2047 Male, age 72, unknown 8.5
2298 Female, age 72, unknown 7.7
2750 Male, age 76, both hemispheres 7.6
2016 Female, age 72, unknown 6.9
Inferior colliculus
nTPM: 9.0
2097 Female, age 72, unknown 10.7
1890 Male, age 53, unknown 9.3
1848 Female, age 42, unknown 8.7
2849 Male, age 72, unknown 7.2
Median raphe nucleus
nTPM: 6.6
2220 Male, age 76, midline 6.6
Pedunculopontine tegmental nucleus
nTPM: 8.0
1921 Female, age 85, both hemispheres 8.6
2334 Male, age 80, both hemispheres 7.9
2338 Male, age 61, both hemispheres 7.4
Periaquaductal grey, anterior
nTPM: 6.7
2502 Female, age 75, unknown 7.7
1947 Male, age 18, unknown 7.6
1795 Male, age 51, unknown 4.8
Periaquaductal grey, dorsal
nTPM: 6.3
2464 Female, age 72, unknown 6.9
1840 Male, age 53, unknown 6.3
2850 Male, age 76, both hemispheres 6.1
1831 Male, age 72, unknown 5.9
Periaquaductal grey, lateral
nTPM: 5.5
2272 Male, age 74, both hemispheres 7.1
2053 Male, age 18, unknown 5.1
2140 Male, age 76, both hemispheres 4.3
Pretectal area
nTPM: 7.5
1817 Female, age 42, unknown 10.0
2007 Male, age 72, unknown 9.9
1944 Female, age 72, unknown 9.8
1815 Male, age 53, unknown 8.1
2273 Male, age 74, both hemispheres 8.1
1816 Male, age 51, unknown 8.0
2224 Female, age 72, unknown 7.8
2667 Female, age 75, unknown 6.9
2825 Male, age 18, unknown 4.9
2316 Male, age 76, right hemisphere 4.4
2407 Male, age 75, both hemispheres 4.4
Red nucleus
nTPM: 8.0
1821 Female, age 72, unknown 12.5
1865 Male, age 51, unknown 9.3
1954 Female, age 42, unknown 9.3
2785 Male, age 18, unknown 9.0
1904 Male, age 53, unknown 8.8
2503 Female, age 72, unknown 8.3
2769 Male, age 72, unknown 8.3
2227 Male, age 72, unknown 7.5
2823 Male, age 76, right hemisphere 7.3
2725 Female, age 75, unknown 7.2
2588 Male, age 74, left hemisphere 4.6
2584 Male, age 75, left hemisphere 4.2
Substantia nigra
nTPM: 8.8
2409 Female, age 72, unknown 12.4
1916 Female, age 42, unknown 10.9
1889 Female, age 72, unknown 10.6
2241 Male, age 72, unknown 10.4
1851 Male, age 51, unknown 8.8
1941 Male, age 53, unknown 8.6
2699 Male, age 18, unknown 8.5
2590 Female, age 75, unknown 7.5
2583 Male, age 75, right hemisphere 5.6
2665 Male, age 74, both hemispheres 4.5
Superior colliculus
nTPM: 6.7
1895 Male, age 76, right hemisphere 10.0
2087 Female, age 72, unknown 7.7
2668 Female, age 75, unknown 7.6
1839 Male, age 51, unknown 7.4
2587 Male, age 74, left hemisphere 6.7
1913 Female, age 42, unknown 6.2
2261 Male, age 18, unknown 5.6
2664 Male, age 75, both hemispheres 5.5
1796 Male, age 53, unknown 5.0
1995 Male, age 72, unknown 4.9
Ventral tegmental area
nTPM: 7.8
2410 Female, age 72, unknown 12.5
2218 Male, age 76, both hemispheres 8.5
1915 Female, age 42, unknown 7.8
1942 Male, age 51, unknown 6.5
2223 Female, age 72, unknown 6.1
2021 Male, age 53, unknown 5.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.7
Samples: 139

Max nTPM: 19.7
Min nTPM: 3.6
Std nTPM: 2.7
Median nTPM: 8.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 19.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 16.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 14.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 14.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 14.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 14.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 14.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 13.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 12.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.9
FF:10158-103A5 76 years, female 43.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.2
Pig sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 19.5
Min nTPM: 18.5
Sample A Female 19.1
Sample B Female 19.5
Sample C Male 18.5
Sample D Male 18.5
Periaqueductal gray
nTPM: 19.2
Samples: 3

Max nTPM: 20.5
Min nTPM: 17.4
Sample B Female 19.8
Sample C Male 17.4
Sample D Male 20.5
Substantia nigra
nTPM: 17.5
Samples: 4

Max nTPM: 17.9
Min nTPM: 16.9
Sample A Female 16.9
Sample B Female 17.7
Sample C Male 17.9
Sample D Male 17.6
Superior colliculi
nTPM: 17.6
Samples: 4

Max nTPM: 18.3
Min nTPM: 17.2
Sample A Female 17.2
Sample B Female 17.3
Sample C Male 17.7
Sample D Male 18.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.4
Samples: 4

Max nTPM: 11.0
Min nTPM: 9.2
Sample A Male 11.0
Sample B Male 10.8
Sample C Female 10.5
Sample D Female 9.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67787329 Antisense, RP_040916_02_G06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.