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MTA3
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:21.9 nTPM
HPA:21.9 nTPM
GTEx:21.7 nTPM
FANTOM5:51.0 Scaled Tags Per Million
Pig:10.3 nTPM
Mouse:24.8 nTPM
Allen mouse:5.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039433
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.9
Sample id Sample description nTPM
Hippocampus
nTPM: 19.7
1855 Male, age 76, left hemisphere 21.8
2148 Female, age 91, left hemisphere 21.5
1898 Male, age 80, left hemisphere 21.4
2621 Female, age 67, right hemisphere 20.8
1911 Female, age 85, right hemisphere 18.0
2529 Female, age 94, left hemisphere 14.6
Dentate gyrus
nTPM: 19.3
1927 Female, age 91, both hemispheres 23.7
2531 Female, age 67, both hemispheres 21.8
2010 Male, age 76, both hemispheres 19.2
2530 Female, age 94, left hemisphere 17.2
2246 Female, age 85, both hemispheres 17.1
2528 Male, age 74, both hemispheres 16.5
Entorhinal gyrus
nTPM: 17.1
1787 Male, age 76, left hemisphere 19.1
2764 Male, age 80, right hemisphere 18.6
2613 Female, age 94, left hemisphere 17.8
1938 Female, age 85, left hemisphere 17.4
2686 Male, age 75, right hemisphere 17.3
2117 Female, age 91, right hemisphere 12.0
Hippocampus, CA1
nTPM: 21.9
2749 Male, age 80, left hemisphere 30.6
2045 Male, age 76, both hemispheres 23.2
1873 Female, age 85, both hemispheres 21.5
2527 Male, age 74, both hemispheres 18.6
2082 Female, age 91, right hemisphere 15.5
Hippocampus, CA2
nTPM: 19.7
1963 Male, age 80, left hemisphere 27.4
1892 Male, age 76, both hemispheres 26.0
1940 Female, age 85, left hemisphere 17.4
2113 Female, age 91, right hemisphere 16.1
2249 Male, age 74, both hemispheres 15.8
2437 Female, age 94, left hemisphere 15.3
Hippocampus, CA3
nTPM: 21.0
2137 Male, age 80, left hemisphere 30.5
2861 Female, age 67, both hemispheres 26.2
2620 Female, age 94, left hemisphere 21.8
1867 Male, age 76, both hemispheres 18.9
1891 Female, age 85, both hemispheres 15.0
2436 Male, age 74, both hemispheres 13.8
Parahippocampal cortex
nTPM: 17.0
1850 Male, age 80, both hemispheres 18.4
2622 Female, age 67, right hemisphere 18.1
2245 Female, age 91, both hemispheres 18.0
2018 Male, age 76, both hemispheres 17.6
2693 Female, age 94, both hemispheres 17.4
1933 Female, age 85, both hemispheres 17.1
2250 Female, age 67, right hemisphere 16.6
1990 Female, age 91, right hemisphere 16.2
2532 Female, age 72, left hemisphere 16.1
2692 Male, age 74, both hemispheres 14.8
Perirhinal gyrus
nTPM: 19.9
1847 Female, age 91, left hemisphere 21.9
1794 Male, age 80, right hemisphere 19.9
2848 Male, age 76, right hemisphere 19.6
2521 Female, age 94, right hemisphere 19.2
1841 Female, age 85, right hemisphere 18.8
Subiculum
nTPM: 14.9
1901 Male, age 80, both hemispheres 16.8
2729 Female, age 91, right hemisphere 16.5
1977 Female, age 85, both hemispheres 15.5
2042 Male, age 76, both hemispheres 15.3
2619 Male, age 74, both hemispheres 14.8
2438 Female, age 94, left hemisphere 10.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.7
Samples: 197

Max nTPM: 46.0
Min nTPM: 8.1
Std nTPM: 7.8
Median nTPM: 20.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 46.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 43.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 39.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 39.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 38.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 37.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 37.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 37.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 37.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 37.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 37.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.0
FF:10153-102I9 76 years, female 53.0
FF:10169-103B7 60 years, female 49.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 10.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 10.1
Samples: 4

Max nTPM: 12.3
Min nTPM: 7.1
Sample A Female 9.8
Sample B Female 12.3
Sample C Male 7.1
Sample D Male 11.1
Entorhinal cortex
nTPM: 9.6
Samples: 4

Max nTPM: 11.5
Min nTPM: 8.7
Sample A Female 9.4
Sample B Female 8.7
Sample C Male 11.5
Sample D Male 8.9
Subiculum
nTPM: 9.7
Samples: 4

Max nTPM: 12.1
Min nTPM: 7.8
Sample A Female 12.1
Sample B Female 9.9
Sample C Male 9.1
Sample D Male 7.8
Ventral hippocampus
nTPM: 10.3
Samples: 4

Max nTPM: 11.0
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 10.1
Sample C Male 11.0
Sample D Male 10.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.8
Samples: 4

Max nTPM: 28.2
Min nTPM: 20.7
Sample A Male 23.3
Sample B Male 28.2
Sample C Female 20.7
Sample D Female 27.1
Hippocampal formation
nTPM: 23.3
Samples: 4

Max nTPM: 25.1
Min nTPM: 19.5
Sample A Male 23.4
Sample B Male 25.1
Sample C Female 19.5
Sample D Female 25.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.8
130537 Antisense, RP_040507_03_C01, Mouse strain C57BL/6J (56 days, male) 5.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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