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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:169.2 nTPM
HPA:169.2 nTPM
GTEx:124.8 nTPM
FANTOM5:71.4 Scaled Tags Per Million
Pig:79.8 nTPM
Mouse:31.0 nTPM
Allen mouse:7.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 169.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 163.9
2219 Male, age 76, both hemispheres 180.1
2666 Male, age 74, left hemisphere 177.2
1827 Male, age 72, unknown 166.6
2586 Male, age 75, left hemisphere 164.6
2828 Female, age 72, unknown 164.4
2019 Male, age 18, unknown 161.2
1833 Male, age 53, unknown 158.9
1830 Male, age 51, unknown 157.9
1870 Female, age 42, unknown 156.2
2411 Female, age 72, unknown 152.0
Dorsal raphe nucleus
nTPM: 148.7
1828 Male, age 53, unknown 151.8
2016 Female, age 72, unknown 149.2
2298 Female, age 72, unknown 147.6
2750 Male, age 76, both hemispheres 147.5
2047 Male, age 72, unknown 147.3
Inferior colliculus
nTPM: 169.2
2097 Female, age 72, unknown 172.8
2849 Male, age 72, unknown 170.9
1848 Female, age 42, unknown 167.1
1890 Male, age 53, unknown 165.8
Median raphe nucleus
nTPM: 147.5
2220 Male, age 76, midline 147.5
Pedunculopontine tegmental nucleus
nTPM: 156.2
1921 Female, age 85, both hemispheres 157.4
2334 Male, age 80, both hemispheres 156.3
2338 Male, age 61, both hemispheres 154.9
Periaquaductal grey, anterior
nTPM: 160.9
2502 Female, age 75, unknown 163.8
1795 Male, age 51, unknown 162.0
1947 Male, age 18, unknown 156.9
Periaquaductal grey, dorsal
nTPM: 156.1
2464 Female, age 72, unknown 159.2
1831 Male, age 72, unknown 158.9
1840 Male, age 53, unknown 156.2
2850 Male, age 76, both hemispheres 150.1
Periaquaductal grey, lateral
nTPM: 153.3
2053 Male, age 18, unknown 157.9
2140 Male, age 76, both hemispheres 151.2
2272 Male, age 74, both hemispheres 150.7
Pretectal area
nTPM: 163.3
1816 Male, age 51, unknown 178.7
1817 Female, age 42, unknown 174.6
2007 Male, age 72, unknown 173.5
1944 Female, age 72, unknown 172.1
1815 Male, age 53, unknown 168.3
2316 Male, age 76, right hemisphere 160.8
2825 Male, age 18, unknown 156.6
2667 Female, age 75, unknown 156.1
2407 Male, age 75, both hemispheres 153.7
2224 Female, age 72, unknown 151.1
2273 Male, age 74, both hemispheres 150.6
Red nucleus
nTPM: 163.5
2588 Male, age 74, left hemisphere 176.5
2725 Female, age 75, unknown 173.6
2785 Male, age 18, unknown 166.9
2503 Female, age 72, unknown 166.0
2584 Male, age 75, left hemisphere 165.1
2227 Male, age 72, unknown 160.6
1954 Female, age 42, unknown 159.9
1865 Male, age 51, unknown 159.6
1904 Male, age 53, unknown 159.4
2823 Male, age 76, right hemisphere 158.9
2769 Male, age 72, unknown 158.8
1821 Female, age 72, unknown 156.8
Substantia nigra
nTPM: 159.1
2665 Male, age 74, both hemispheres 168.3
1889 Female, age 72, unknown 165.7
1851 Male, age 51, unknown 162.3
2699 Male, age 18, unknown 158.6
2409 Female, age 72, unknown 158.1
1941 Male, age 53, unknown 157.9
2583 Male, age 75, right hemisphere 156.9
2590 Female, age 75, unknown 156.9
1916 Female, age 42, unknown 155.0
2241 Male, age 72, unknown 151.5
Superior colliculus
nTPM: 164.9
1796 Male, age 53, unknown 174.2
2087 Female, age 72, unknown 169.6
2261 Male, age 18, unknown 166.6
1895 Male, age 76, right hemisphere 165.8
1995 Male, age 72, unknown 164.7
1913 Female, age 42, unknown 163.0
1839 Male, age 51, unknown 161.8
2664 Male, age 75, both hemispheres 161.4
2587 Male, age 74, left hemisphere 161.0
2668 Female, age 75, unknown 160.9
Ventral tegmental area
nTPM: 159.7
2223 Female, age 72, unknown 179.0
1915 Female, age 42, unknown 158.8
2410 Female, age 72, unknown 158.0
2218 Male, age 76, both hemispheres 157.2
1942 Male, age 51, unknown 152.9
2021 Male, age 53, unknown 152.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 124.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 124.8
Samples: 139

Max nTPM: 365.4
Min nTPM: 29.8
Std nTPM: 68.3
Median nTPM: 107.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 365.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 342.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 332.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 317.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 312.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 301.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 286.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 268.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 267.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 264.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 245.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.4
FF:10158-103A5 76 years, female 71.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.8
Pig sample Sample description nTPM
Midbrain
nTPM: 61.4
Samples: 4

Max nTPM: 85.4
Min nTPM: 30.0
Sample A Female 30.0
Sample B Female 46.9
Sample C Male 83.1
Sample D Male 85.4
Periaqueductal gray
nTPM: 29.0
Samples: 3

Max nTPM: 31.4
Min nTPM: 26.3
Sample B Female 29.2
Sample C Male 31.4
Sample D Male 26.3
Substantia nigra
nTPM: 54.8
Samples: 4

Max nTPM: 62.4
Min nTPM: 44.5
Sample A Female 59.3
Sample B Female 53.1
Sample C Male 62.4
Sample D Male 44.5
Superior colliculi
nTPM: 79.8
Samples: 4

Max nTPM: 92.3
Min nTPM: 59.2
Sample A Female 89.9
Sample B Female 59.2
Sample C Male 92.3
Sample D Male 77.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.0
Samples: 4

Max nTPM: 33.8
Min nTPM: 27.8
Sample A Male 33.8
Sample B Male 27.8
Sample C Female 30.1
Sample D Female 32.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.4
68797501 Antisense, RP_050125_02_E12, Mouse strain C57BL/6J (56 days, male) 7.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.