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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:27.1 nTPM
HPA:27.1 nTPM
GTEx:25.5 nTPM
FANTOM5:14.0 Scaled Tags Per Million
Pig:9.4 nTPM
Mouse:8.4 nTPM
Allen mouse:2.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA049157
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.1
Sample id Sample description nTPM
Hippocampus
nTPM: 26.9
2529 Female, age 94, left hemisphere 29.1
1898 Male, age 80, left hemisphere 28.3
1911 Female, age 85, right hemisphere 28.3
1855 Male, age 76, left hemisphere 26.1
2148 Female, age 91, left hemisphere 25.8
2621 Female, age 67, right hemisphere 23.8
Dentate gyrus
nTPM: 25.9
1927 Female, age 91, both hemispheres 27.0
2010 Male, age 76, both hemispheres 26.4
2531 Female, age 67, both hemispheres 25.8
2528 Male, age 74, both hemispheres 25.7
2530 Female, age 94, left hemisphere 25.6
2246 Female, age 85, both hemispheres 25.1
Entorhinal gyrus
nTPM: 25.7
1938 Female, age 85, left hemisphere 28.8
2117 Female, age 91, right hemisphere 26.2
1787 Male, age 76, left hemisphere 25.9
2764 Male, age 80, right hemisphere 25.9
2686 Male, age 75, right hemisphere 23.8
2613 Female, age 94, left hemisphere 23.6
Hippocampus, CA1
nTPM: 25.6
2527 Male, age 74, both hemispheres 28.5
2045 Male, age 76, both hemispheres 25.7
2082 Female, age 91, right hemisphere 25.5
1873 Female, age 85, both hemispheres 24.5
2749 Male, age 80, left hemisphere 24.0
Hippocampus, CA2
nTPM: 26.4
1940 Female, age 85, left hemisphere 28.6
2249 Male, age 74, both hemispheres 27.8
2437 Female, age 94, left hemisphere 26.8
2113 Female, age 91, right hemisphere 25.9
1892 Male, age 76, both hemispheres 24.8
1963 Male, age 80, left hemisphere 24.6
Hippocampus, CA3
nTPM: 25.4
2436 Male, age 74, both hemispheres 27.3
2861 Female, age 67, both hemispheres 26.6
1891 Female, age 85, both hemispheres 26.4
1867 Male, age 76, both hemispheres 24.4
2137 Male, age 80, left hemisphere 24.3
2620 Female, age 94, left hemisphere 23.5
Parahippocampal cortex
nTPM: 25.2
1933 Female, age 85, both hemispheres 26.9
2018 Male, age 76, both hemispheres 26.6
2692 Male, age 74, both hemispheres 26.5
2532 Female, age 72, left hemisphere 25.6
1850 Male, age 80, both hemispheres 25.5
2250 Female, age 67, right hemisphere 25.4
1990 Female, age 91, right hemisphere 24.8
2622 Female, age 67, right hemisphere 24.3
2245 Female, age 91, both hemispheres 23.7
2693 Female, age 94, both hemispheres 23.1
Perirhinal gyrus
nTPM: 25.1
1847 Female, age 91, left hemisphere 26.5
1794 Male, age 80, right hemisphere 25.6
1841 Female, age 85, right hemisphere 24.8
2521 Female, age 94, right hemisphere 24.8
2848 Male, age 76, right hemisphere 23.6
Subiculum
nTPM: 27.1
2438 Female, age 94, left hemisphere 28.5
2619 Male, age 74, both hemispheres 28.2
1901 Male, age 80, both hemispheres 27.9
2042 Male, age 76, both hemispheres 26.4
1977 Female, age 85, both hemispheres 25.9
2729 Female, age 91, right hemisphere 25.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.5
Samples: 197

Max nTPM: 45.8
Min nTPM: 11.1
Std nTPM: 6.0
Median nTPM: 25.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 45.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 40.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 39.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 39.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 38.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 38.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 37.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 37.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 36.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 36.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 36.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 14.0
FF:10153-102I9 76 years, female 17.6
FF:10169-103B7 60 years, female 10.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 9.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 9.5
Samples: 4

Max nTPM: 11.6
Min nTPM: 7.5
Sample A Female 11.6
Sample B Female 7.5
Sample C Male 10.1
Sample D Male 8.6
Entorhinal cortex
nTPM: 7.7
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.8
Sample A Female 7.9
Sample B Female 8.3
Sample C Male 6.8
Sample D Male 7.6
Subiculum
nTPM: 7.8
Samples: 4

Max nTPM: 9.8
Min nTPM: 6.7
Sample A Female 9.8
Sample B Female 7.3
Sample C Male 7.4
Sample D Male 6.7
Ventral hippocampus
nTPM: 8.8
Samples: 4

Max nTPM: 10.8
Min nTPM: 6.8
Sample A Female 8.9
Sample B Female 6.8
Sample C Male 10.8
Sample D Male 8.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.4
Samples: 4

Max nTPM: 9.8
Min nTPM: 6.7
Sample A Male 9.2
Sample B Male 7.7
Sample C Female 9.8
Sample D Female 6.7
Hippocampal formation
nTPM: 8.1
Samples: 4

Max nTPM: 8.9
Min nTPM: 6.3
Sample A Male 8.9
Sample B Male 8.5
Sample C Female 6.3
Sample D Female 8.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.3
67881545 Antisense, RP_041018_01_E02, Mouse strain C57BL/6J (56 days, male) 3.3
71664147 Antisense, RP_050927_04_G08, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.