ABOUTMENU
HELP
NEWS
MPPED2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.3 nTPM
HPA:13.3 nTPM
GTEx:16.1 nTPM
FANTOM5:50.0 Scaled Tags Per Million
Pig:36.5 nTPM
Mouse:63.1 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.7
1857 Female, age 85, left hemisphere 14.7
2846 Female, age 79, unknown 13.4
2290 Female, age 72, unknown 13.0
1854 Male, age 80, left hemisphere 12.5
2289 Male, age 61, right hemisphere 11.6
2288 Male, age 75, left hemisphere 10.4
1781 Male, age 74, unknown 10.1
2481 Female, age 94, left hemisphere 8.0
Claustrum
nTPM: 5.6
2196 Female, age 79, unknown 7.7
2568 Male, age 61, both hemispheres 7.3
2491 Male, age 75, both hemispheres 6.6
2392 Female, age 94, both hemispheres 6.2
2284 Female, age 91, both hemispheres 5.9
2645 Female, age 72, unknown 5.4
2198 Male, age 80, both hemispheres 5.3
1956 Male, age 74, unknown 3.9
2292 Female, age 85, both hemispheres 2.2
Globus pallidus, externus
nTPM: 4.9
2646 Male, age 61, right hemisphere 7.0
2772 Female, age 79, unknown 7.0
2567 Female, age 72, unknown 4.7
1996 Male, age 80, right hemisphere 3.2
2395 Male, age 75, both hemispheres 2.7
Globus pallidus, internus
nTPM: 3.7
2483 Female, age 94, right hemisphere 6.4
2566 Female, age 72, unknown 5.4
1818 Male, age 74, unknown 4.1
2111 Female, age 85, right hemisphere 3.4
2287 Male, age 75, right hemisphere 2.4
2037 Male, age 80, right hemisphere 2.3
2778 Female, age 91, both hemispheres 1.9
Nucleus accumbens
nTPM: 13.3
2824 Male, age 61, right hemisphere 21.9
1856 Female, age 91, right hemisphere 19.4
2698 Female, age 72, unknown 14.6
1783 Male, age 74, unknown 14.0
1806 Female, age 85, left hemisphere 13.8
2286 Male, age 75, left hemisphere 9.3
2391 Female, age 94, left hemisphere 7.4
2732 Male, age 80, right hemisphere 5.7
Nucleus basalis of Meynert
nTPM: 9.8
2393 Male, age 80, right hemisphere 12.4
2484 Female, age 94, left hemisphere 11.7
2821 Male, age 75, both hemispheres 8.5
2569 Male, age 61, both hemispheres 6.7
Nucleus of the diagonal band
nTPM: 9.9
1979 Male, age 74, unknown 14.4
2195 Female, age 85, both hemispheres 9.7
2775 Male, age 80, right hemisphere 9.1
1812 Female, age 91, both hemispheres 8.8
2029 Male, age 61, right hemisphere 7.5
Olfactory tubercle
nTPM: 7.7
2856 Male, age 75, right hemisphere 9.1
2487 Female, age 94, left hemisphere 7.9
1998 Female, age 91, both hemispheres 7.2
1846 Male, age 80, right hemisphere 6.7
Putamen
nTPM: 13.3
1838 Male, age 80, right hemisphere 18.0
1829 Male, age 74, unknown 15.1
1937 Female, age 91, right hemisphere 14.8
2466 Female, age 79, unknown 13.8
2489 Female, age 72, unknown 13.2
2647 Male, age 75, left hemisphere 9.4
2482 Female, age 94, left hemisphere 9.1
Septal nuclei
nTPM: 9.9
2394 Male, age 61, left hemisphere 12.3
2199 Male, age 80, right hemisphere 10.1
2031 Female, age 72, unknown 10.0
1960 Male, age 74, unknown 9.6
2059 Female, age 85, both hemispheres 9.3
2009 Female, age 91, both hemispheres 9.2
2629 Female, age 94, right hemisphere 8.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.7
Samples: 246

Max nTPM: 38.7
Min nTPM: 2.9
Std nTPM: 5.1
Median nTPM: 11.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 38.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 25.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 25.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 24.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 23.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 23.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 23.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 23.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 23.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 22.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 21.8
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.1
Samples: 246

Max nTPM: 30.4
Min nTPM: 3.0
Std nTPM: 5.4
Median nTPM: 16.2
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 30.4
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 28.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 27.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 27.1
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 26.7
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 26.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 26.4
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 26.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 26.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 25.6
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 25.4
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 12.8
Samples: 205

Max nTPM: 32.6
Min nTPM: 2.2
Std nTPM: 5.3
Median nTPM: 12.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 32.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 27.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 25.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 25.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 25.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 24.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 23.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 23.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 23.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 23.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 22.3
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 34.8
FF:10164-103B2 76 years, female 34.8
Globus pallidus
Scaled Tags Per Million: 15.0
FF:10175-103C4 60 years, female 22.1
FF:10161-103A8 76 years, female 7.9
Nucleus accumbens
Scaled Tags Per Million: 27.7
FF:10037-101F1 23-56 years, mixed 27.7
Putamen
Scaled Tags Per Million: 50.0
FF:10176-103C5 60 years, female 50.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 36.5
Pig sample Sample description nTPM
Caudate
nTPM: 32.0
Samples: 4

Max nTPM: 37.6
Min nTPM: 26.2
Sample A Female 26.2
Sample B Female 32.0
Sample C Male 37.6
Sample D Male 32.1
Putamen
nTPM: 36.5
Samples: 4

Max nTPM: 51.4
Min nTPM: 22.8
Sample A Female 22.8
Sample B Female 37.1
Sample C Male 51.4
Sample D Male 34.8
Septum
nTPM: 28.2
Samples: 4

Max nTPM: 37.9
Min nTPM: 15.5
Sample A Female 26.9
Sample B Female 32.4
Sample C Male 15.5
Sample D Male 37.9
Ventral pallidum
nTPM: 29.7
Samples: 4

Max nTPM: 33.2
Min nTPM: 26.1
Sample A Female 33.2
Sample B Female 33.1
Sample C Male 26.1
Sample D Male 26.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 63.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 63.1
Samples: 4

Max nTPM: 67.7
Min nTPM: 59.3
Sample A Male 65.0
Sample B Male 67.7
Sample C Female 59.3
Sample D Female 60.4
Septum
nTPM: 37.4
Samples: 4

Max nTPM: 39.0
Min nTPM: 34.9
Sample A Male 38.2
Sample B Male 37.5
Sample C Female 39.0
Sample D Female 34.9
Ventral forebrain
nTPM: 48.7
Samples: 4

Max nTPM: 53.8
Min nTPM: 41.6
Sample A Male 41.6
Sample B Male 51.2
Sample C Female 48.3
Sample D Female 53.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
73497744 Antisense, RP_051121_01_F02, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.3
73497744 Antisense, RP_051121_01_F02, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.