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CFAP20
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.0 nTPM
HPA:35.0 nTPM
GTEx:22.9 nTPM
FANTOM5:51.0 Scaled Tags Per Million
Pig:6.8 nTPM
Mouse:33.6 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.2
2411 Female, age 72, unknown 33.5
2019 Male, age 18, unknown 33.2
1827 Male, age 72, unknown 31.9
1833 Male, age 53, unknown 31.9
1870 Female, age 42, unknown 31.8
2828 Female, age 72, unknown 31.8
2219 Male, age 76, both hemispheres 31.4
1830 Male, age 51, unknown 30.7
2666 Male, age 74, left hemisphere 28.7
2586 Male, age 75, left hemisphere 27.3
Dorsal raphe nucleus
nTPM: 32.4
2298 Female, age 72, unknown 37.3
1828 Male, age 53, unknown 31.9
2750 Male, age 76, both hemispheres 31.4
2016 Female, age 72, unknown 30.8
2047 Male, age 72, unknown 30.7
Inferior colliculus
nTPM: 31.2
2097 Female, age 72, unknown 33.0
1848 Female, age 42, unknown 30.9
1890 Male, age 53, unknown 30.5
2849 Male, age 72, unknown 30.3
Median raphe nucleus
nTPM: 32.5
2220 Male, age 76, midline 32.5
Pedunculopontine tegmental nucleus
nTPM: 31.7
1921 Female, age 85, both hemispheres 33.2
2334 Male, age 80, both hemispheres 33.0
2338 Male, age 61, both hemispheres 29.0
Periaquaductal grey, anterior
nTPM: 32.1
1795 Male, age 51, unknown 32.7
1947 Male, age 18, unknown 32.5
2502 Female, age 75, unknown 31.1
Periaquaductal grey, dorsal
nTPM: 31.0
2850 Male, age 76, both hemispheres 32.4
1831 Male, age 72, unknown 31.5
1840 Male, age 53, unknown 30.6
2464 Female, age 72, unknown 29.5
Periaquaductal grey, lateral
nTPM: 35.0
2272 Male, age 74, both hemispheres 43.3
2053 Male, age 18, unknown 31.3
2140 Male, age 76, both hemispheres 30.6
Pretectal area
nTPM: 34.6
2273 Male, age 74, both hemispheres 39.1
1944 Female, age 72, unknown 36.9
2667 Female, age 75, unknown 36.5
1816 Male, age 51, unknown 36.3
1817 Female, age 42, unknown 35.2
2224 Female, age 72, unknown 34.6
2007 Male, age 72, unknown 34.2
1815 Male, age 53, unknown 32.6
2407 Male, age 75, both hemispheres 32.3
2825 Male, age 18, unknown 31.9
2316 Male, age 76, right hemisphere 30.8
Red nucleus
nTPM: 31.3
2785 Male, age 18, unknown 33.4
2725 Female, age 75, unknown 33.3
1821 Female, age 72, unknown 33.2
1904 Male, age 53, unknown 32.2
2769 Male, age 72, unknown 31.7
1954 Female, age 42, unknown 31.3
2503 Female, age 72, unknown 31.3
2227 Male, age 72, unknown 31.2
1865 Male, age 51, unknown 30.9
2823 Male, age 76, right hemisphere 30.5
2584 Male, age 75, left hemisphere 29.1
2588 Male, age 74, left hemisphere 27.8
Substantia nigra
nTPM: 30.4
2409 Female, age 72, unknown 33.8
1889 Female, age 72, unknown 33.3
1851 Male, age 51, unknown 30.9
1916 Female, age 42, unknown 30.9
1941 Male, age 53, unknown 30.4
2590 Female, age 75, unknown 30.2
2241 Male, age 72, unknown 29.8
2699 Male, age 18, unknown 29.0
2583 Male, age 75, right hemisphere 28.8
2665 Male, age 74, both hemispheres 26.8
Superior colliculus
nTPM: 31.9
2587 Male, age 74, left hemisphere 33.9
2261 Male, age 18, unknown 33.5
1995 Male, age 72, unknown 32.9
2087 Female, age 72, unknown 32.9
1796 Male, age 53, unknown 32.8
1913 Female, age 42, unknown 32.0
1839 Male, age 51, unknown 31.3
1895 Male, age 76, right hemisphere 31.2
2668 Female, age 75, unknown 29.5
2664 Male, age 75, both hemispheres 28.7
Ventral tegmental area
nTPM: 31.5
2410 Female, age 72, unknown 34.0
2218 Male, age 76, both hemispheres 31.8
2223 Female, age 72, unknown 31.3
2021 Male, age 53, unknown 31.1
1915 Female, age 42, unknown 30.8
1942 Male, age 51, unknown 29.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.9
Samples: 139

Max nTPM: 36.9
Min nTPM: 13.1
Std nTPM: 5.3
Median nTPM: 21.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 36.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 35.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 35.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 35.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 34.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 34.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 33.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 33.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 32.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 32.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 32.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.0
FF:10158-103A5 76 years, female 51.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.8
Pig sample Sample description nTPM
Midbrain
nTPM: 6.9
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.9
Sample A Female 7.2
Sample B Female 6.0
Sample C Male 8.3
Sample D Male 5.9
Periaqueductal gray
nTPM: 6.0
Samples: 3

Max nTPM: 6.2
Min nTPM: 5.8
Sample B Female 6.2
Sample C Male 5.9
Sample D Male 5.8
Substantia nigra
nTPM: 6.0
Samples: 4

Max nTPM: 7.9
Min nTPM: 4.7
Sample A Female 7.9
Sample B Female 5.5
Sample C Male 6.0
Sample D Male 4.7
Superior colliculi
nTPM: 6.4
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.0
Sample A Female 6.6
Sample B Female 5.0
Sample C Male 8.2
Sample D Male 5.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.6
Samples: 4

Max nTPM: 36.8
Min nTPM: 30.9
Sample A Male 33.8
Sample B Male 36.8
Sample C Female 30.9
Sample D Female 32.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69734815 Antisense, RP_050503_01_C12, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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