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MBD3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.7 nTPM
HPA:11.7 nTPM
GTEx:49.5 nTPM
FANTOM5:13.0 Scaled Tags Per Million
Pig:36.4 nTPM
Mouse:90.2 nTPM
Allen mouse:10.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.7
2586 Male, age 75, left hemisphere 17.0
2666 Male, age 74, left hemisphere 14.1
2219 Male, age 76, both hemispheres 12.3
2019 Male, age 18, unknown 11.6
2828 Female, age 72, unknown 11.4
1827 Male, age 72, unknown 10.6
1833 Male, age 53, unknown 10.5
1830 Male, age 51, unknown 10.2
2411 Female, age 72, unknown 10.2
1870 Female, age 42, unknown 9.0
Dorsal raphe nucleus
nTPM: 8.6
2750 Male, age 76, both hemispheres 9.6
1828 Male, age 53, unknown 9.2
2047 Male, age 72, unknown 8.4
2016 Female, age 72, unknown 8.1
2298 Female, age 72, unknown 7.6
Inferior colliculus
nTPM: 9.5
1890 Male, age 53, unknown 10.8
1848 Female, age 42, unknown 9.8
2097 Female, age 72, unknown 8.9
2849 Male, age 72, unknown 8.6
Median raphe nucleus
nTPM: 8.0
2220 Male, age 76, midline 8.0
Pedunculopontine tegmental nucleus
nTPM: 8.4
1921 Female, age 85, both hemispheres 9.3
2334 Male, age 80, both hemispheres 8.1
2338 Male, age 61, both hemispheres 7.7
Periaquaductal grey, anterior
nTPM: 10.7
1947 Male, age 18, unknown 11.8
2502 Female, age 75, unknown 10.3
1795 Male, age 51, unknown 9.9
Periaquaductal grey, dorsal
nTPM: 8.4
1831 Male, age 72, unknown 10.3
2464 Female, age 72, unknown 9.5
1840 Male, age 53, unknown 7.0
2850 Male, age 76, both hemispheres 6.7
Periaquaductal grey, lateral
nTPM: 8.4
2053 Male, age 18, unknown 9.3
2140 Male, age 76, both hemispheres 9.0
2272 Male, age 74, both hemispheres 6.8
Pretectal area
nTPM: 9.8
2407 Male, age 75, both hemispheres 12.9
2007 Male, age 72, unknown 11.5
1817 Female, age 42, unknown 10.9
1944 Female, age 72, unknown 10.7
1816 Male, age 51, unknown 10.4
1815 Male, age 53, unknown 9.9
2316 Male, age 76, right hemisphere 9.5
2667 Female, age 75, unknown 9.1
2825 Male, age 18, unknown 8.4
2224 Female, age 72, unknown 7.8
2273 Male, age 74, both hemispheres 7.1
Red nucleus
nTPM: 10.9
2584 Male, age 75, left hemisphere 13.4
2588 Male, age 74, left hemisphere 12.6
2785 Male, age 18, unknown 12.1
1904 Male, age 53, unknown 11.8
2227 Male, age 72, unknown 11.8
1865 Male, age 51, unknown 11.6
2769 Male, age 72, unknown 11.6
2823 Male, age 76, right hemisphere 10.6
1821 Female, age 72, unknown 9.1
1954 Female, age 42, unknown 8.9
2503 Female, age 72, unknown 8.9
2725 Female, age 75, unknown 8.1
Substantia nigra
nTPM: 8.9
2583 Male, age 75, right hemisphere 12.7
2665 Male, age 74, both hemispheres 12.1
2590 Female, age 75, unknown 9.3
1889 Female, age 72, unknown 9.0
1851 Male, age 51, unknown 8.9
1916 Female, age 42, unknown 8.3
1941 Male, age 53, unknown 8.3
2699 Male, age 18, unknown 8.3
2241 Male, age 72, unknown 6.4
2409 Female, age 72, unknown 5.3
Superior colliculus
nTPM: 11.3
2664 Male, age 75, both hemispheres 17.6
2668 Female, age 75, unknown 14.9
1913 Female, age 42, unknown 10.8
1839 Male, age 51, unknown 10.4
1995 Male, age 72, unknown 10.3
2087 Female, age 72, unknown 10.2
2587 Male, age 74, left hemisphere 10.0
1796 Male, age 53, unknown 9.8
1895 Male, age 76, right hemisphere 9.6
2261 Male, age 18, unknown 9.5
Ventral tegmental area
nTPM: 8.7
2021 Male, age 53, unknown 9.7
1942 Male, age 51, unknown 9.6
1915 Female, age 42, unknown 9.3
2223 Female, age 72, unknown 8.5
2218 Male, age 76, both hemispheres 7.6
2410 Female, age 72, unknown 7.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.5
Samples: 139

Max nTPM: 88.0
Min nTPM: 21.5
Std nTPM: 11.9
Median nTPM: 48.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 88.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 83.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 83.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 80.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 73.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 70.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 70.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 69.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 69.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 69.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 67.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.0
FF:10158-103A5 76 years, female 13.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.4
Pig sample Sample description nTPM
Midbrain
nTPM: 35.4
Samples: 4

Max nTPM: 38.1
Min nTPM: 34.3
Sample A Female 34.3
Sample B Female 34.6
Sample C Male 34.6
Sample D Male 38.1
Periaqueductal gray
nTPM: 31.3
Samples: 3

Max nTPM: 35.6
Min nTPM: 26.6
Sample B Female 31.7
Sample C Male 35.6
Sample D Male 26.6
Substantia nigra
nTPM: 35.4
Samples: 4

Max nTPM: 41.8
Min nTPM: 28.8
Sample A Female 41.8
Sample B Female 30.6
Sample C Male 40.2
Sample D Male 28.8
Superior colliculi
nTPM: 36.4
Samples: 4

Max nTPM: 42.6
Min nTPM: 28.4
Sample A Female 42.6
Sample B Female 28.4
Sample C Male 33.9
Sample D Male 40.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 90.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.2
Samples: 4

Max nTPM: 100.1
Min nTPM: 82.8
Sample A Male 100.1
Sample B Male 86.1
Sample C Female 82.8
Sample D Female 91.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.4
69080515 Antisense, RP_050324_02_C04, Mouse strain C57BL/6J (56 days, male) 10.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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