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RDH11
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:43.2 nTPM
HPA:43.2 nTPM
GTEx:44.0 nTPM
FANTOM5:123.5 Scaled Tags Per Million
Pig:26.2 nTPM
Mouse:27.0 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB046011
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.2
2481 Female, age 94, left hemisphere 45.2
2288 Male, age 75, left hemisphere 44.7
1857 Female, age 85, left hemisphere 39.8
1854 Male, age 80, left hemisphere 38.3
2846 Female, age 79, unknown 37.4
2290 Female, age 72, unknown 37.1
1781 Male, age 74, unknown 36.2
2289 Male, age 61, right hemisphere 34.6
Claustrum
nTPM: 38.7
1956 Male, age 74, unknown 43.0
2198 Male, age 80, both hemispheres 40.7
2392 Female, age 94, both hemispheres 39.7
2568 Male, age 61, both hemispheres 38.7
2196 Female, age 79, unknown 38.6
2292 Female, age 85, both hemispheres 38.4
2645 Female, age 72, unknown 36.7
2491 Male, age 75, both hemispheres 36.5
2284 Female, age 91, both hemispheres 36.3
Globus pallidus, externus
nTPM: 42.0
1996 Male, age 80, right hemisphere 49.1
2772 Female, age 79, unknown 47.0
2395 Male, age 75, both hemispheres 45.6
2646 Male, age 61, right hemisphere 37.1
2567 Female, age 72, unknown 31.4
Globus pallidus, internus
nTPM: 43.2
2287 Male, age 75, right hemisphere 49.3
2778 Female, age 91, both hemispheres 47.0
2111 Female, age 85, right hemisphere 43.8
1818 Male, age 74, unknown 43.7
2037 Male, age 80, right hemisphere 43.4
2483 Female, age 94, right hemisphere 40.7
2566 Female, age 72, unknown 34.8
Nucleus accumbens
nTPM: 38.9
2286 Male, age 75, left hemisphere 47.3
2391 Female, age 94, left hemisphere 44.5
1806 Female, age 85, left hemisphere 39.1
2698 Female, age 72, unknown 37.9
1856 Female, age 91, right hemisphere 36.9
2824 Male, age 61, right hemisphere 36.4
2732 Male, age 80, right hemisphere 34.6
1783 Male, age 74, unknown 34.0
Nucleus basalis of Meynert
nTPM: 37.8
2821 Male, age 75, both hemispheres 40.1
2569 Male, age 61, both hemispheres 37.5
2393 Male, age 80, right hemisphere 37.0
2484 Female, age 94, left hemisphere 36.7
Nucleus of the diagonal band
nTPM: 39.4
1812 Female, age 91, both hemispheres 41.2
2775 Male, age 80, right hemisphere 40.0
2195 Female, age 85, both hemispheres 39.7
2029 Male, age 61, right hemisphere 38.8
1979 Male, age 74, unknown 37.3
Olfactory tubercle
nTPM: 38.5
1846 Male, age 80, right hemisphere 40.2
2856 Male, age 75, right hemisphere 39.6
1998 Female, age 91, both hemispheres 37.7
2487 Female, age 94, left hemisphere 36.3
Putamen
nTPM: 36.5
2482 Female, age 94, left hemisphere 42.7
1937 Female, age 91, right hemisphere 37.4
2466 Female, age 79, unknown 37.0
1829 Male, age 74, unknown 36.4
1838 Male, age 80, right hemisphere 36.0
2647 Male, age 75, left hemisphere 33.1
2489 Female, age 72, unknown 33.0
Septal nuclei
nTPM: 39.8
2031 Female, age 72, unknown 43.7
1960 Male, age 74, unknown 41.6
2394 Male, age 61, left hemisphere 41.0
2009 Female, age 91, both hemispheres 38.3
2629 Female, age 94, right hemisphere 38.3
2199 Male, age 80, right hemisphere 38.1
2059 Female, age 85, both hemispheres 37.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 41.7
Samples: 246

Max nTPM: 76.6
Min nTPM: 26.5
Std nTPM: 6.7
Median nTPM: 40.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 76.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 60.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 58.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 58.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 57.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 57.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 55.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 54.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 54.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 53.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 53.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.3
Samples: 246

Max nTPM: 63.7
Min nTPM: 23.3
Std nTPM: 6.3
Median nTPM: 36.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 63.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 57.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 55.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 54.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 54.7
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 53.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 50.8
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 50.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 50.2
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 50.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 49.6
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Brain - Putamen (basal ganglia)
Average nTPM: 44.0
Samples: 205

Max nTPM: 78.3
Min nTPM: 24.0
Std nTPM: 8.1
Median nTPM: 42.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 78.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 69.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 69.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 66.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 65.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 63.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 59.3
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 59.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 58.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 57.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 57.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 123.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 84.5
FF:10164-103B2 76 years, female 84.5
Globus pallidus
Scaled Tags Per Million: 102.7
FF:10175-103C4 60 years, female 109.7
FF:10161-103A8 76 years, female 95.7
Nucleus accumbens
Scaled Tags Per Million: 123.5
FF:10037-101F1 23-56 years, mixed 123.5
Putamen
Scaled Tags Per Million: 82.4
FF:10176-103C5 60 years, female 82.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 26.2
Pig sample Sample description nTPM
Caudate
nTPM: 18.8
Samples: 4

Max nTPM: 21.3
Min nTPM: 17.1
Sample A Female 17.1
Sample B Female 19.5
Sample C Male 21.3
Sample D Male 17.2
Putamen
nTPM: 21.1
Samples: 4

Max nTPM: 27.5
Min nTPM: 17.6
Sample A Female 19.6
Sample B Female 17.6
Sample C Male 27.5
Sample D Male 19.7
Septum
nTPM: 26.2
Samples: 4

Max nTPM: 35.9
Min nTPM: 21.4
Sample A Female 21.4
Sample B Female 21.8
Sample C Male 35.9
Sample D Male 25.6
Ventral pallidum
nTPM: 22.9
Samples: 4

Max nTPM: 30.0
Min nTPM: 17.5
Sample A Female 17.5
Sample B Female 22.3
Sample C Male 30.0
Sample D Male 21.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 27.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 24.6
Samples: 4

Max nTPM: 26.0
Min nTPM: 22.8
Sample A Male 23.9
Sample B Male 22.8
Sample C Female 26.0
Sample D Female 25.8
Septum
nTPM: 26.5
Samples: 4

Max nTPM: 30.4
Min nTPM: 23.3
Sample A Male 23.3
Sample B Male 26.6
Sample C Female 30.4
Sample D Female 25.5
Ventral forebrain
nTPM: 27.1
Samples: 4

Max nTPM: 27.8
Min nTPM: 25.6
Sample A Male 25.6
Sample B Male 27.5
Sample C Female 27.3
Sample D Female 27.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
69549651 Antisense, RP_050315_01_C02, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
69549651 Antisense, RP_050315_01_C02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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