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RDH11
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.7 nTPM
HPA:47.7 nTPM
GTEx:49.8 nTPM
FANTOM5:137.0 Scaled Tags Per Million
Pig:36.4 nTPM
Mouse:29.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.2
1870 Female, age 42, unknown 47.2
2411 Female, age 72, unknown 45.9
1827 Male, age 72, unknown 45.2
2828 Female, age 72, unknown 43.7
1833 Male, age 53, unknown 43.0
1830 Male, age 51, unknown 41.7
2219 Male, age 76, both hemispheres 41.0
2019 Male, age 18, unknown 40.9
2666 Male, age 74, left hemisphere 37.1
2586 Male, age 75, left hemisphere 36.6
Dorsal raphe nucleus
nTPM: 43.5
2298 Female, age 72, unknown 47.0
2750 Male, age 76, both hemispheres 46.8
2047 Male, age 72, unknown 44.1
1828 Male, age 53, unknown 41.3
2016 Female, age 72, unknown 38.3
Inferior colliculus
nTPM: 41.3
2097 Female, age 72, unknown 45.3
1848 Female, age 42, unknown 42.6
1890 Male, age 53, unknown 39.3
2849 Male, age 72, unknown 38.0
Median raphe nucleus
nTPM: 47.7
2220 Male, age 76, midline 47.7
Pedunculopontine tegmental nucleus
nTPM: 43.6
2334 Male, age 80, both hemispheres 45.9
1921 Female, age 85, both hemispheres 43.2
2338 Male, age 61, both hemispheres 41.7
Periaquaductal grey, anterior
nTPM: 42.8
1947 Male, age 18, unknown 45.7
2502 Female, age 75, unknown 43.5
1795 Male, age 51, unknown 39.2
Periaquaductal grey, dorsal
nTPM: 40.3
2850 Male, age 76, both hemispheres 43.0
2464 Female, age 72, unknown 40.8
1840 Male, age 53, unknown 38.9
1831 Male, age 72, unknown 38.6
Periaquaductal grey, lateral
nTPM: 40.4
2053 Male, age 18, unknown 42.0
2140 Male, age 76, both hemispheres 41.4
2272 Male, age 74, both hemispheres 37.9
Pretectal area
nTPM: 42.6
2667 Female, age 75, unknown 45.9
1817 Female, age 42, unknown 45.5
1815 Male, age 53, unknown 44.9
2007 Male, age 72, unknown 44.0
2224 Female, age 72, unknown 43.9
1816 Male, age 51, unknown 43.8
1944 Female, age 72, unknown 42.0
2825 Male, age 18, unknown 41.3
2273 Male, age 74, both hemispheres 40.4
2316 Male, age 76, right hemisphere 40.0
2407 Male, age 75, both hemispheres 36.8
Red nucleus
nTPM: 43.1
1821 Female, age 72, unknown 50.2
1954 Female, age 42, unknown 46.2
1865 Male, age 51, unknown 46.1
1904 Male, age 53, unknown 44.9
2503 Female, age 72, unknown 44.0
2725 Female, age 75, unknown 43.8
2769 Male, age 72, unknown 43.2
2227 Male, age 72, unknown 43.0
2823 Male, age 76, right hemisphere 42.6
2785 Male, age 18, unknown 40.1
2588 Male, age 74, left hemisphere 39.8
2584 Male, age 75, left hemisphere 33.7
Substantia nigra
nTPM: 43.2
1916 Female, age 42, unknown 50.0
1851 Male, age 51, unknown 47.0
1889 Female, age 72, unknown 46.2
1941 Male, age 53, unknown 44.9
2409 Female, age 72, unknown 44.7
2241 Male, age 72, unknown 44.6
2699 Male, age 18, unknown 43.1
2590 Female, age 75, unknown 38.5
2583 Male, age 75, right hemisphere 37.4
2665 Male, age 74, both hemispheres 35.6
Superior colliculus
nTPM: 40.8
2587 Male, age 74, left hemisphere 43.1
1895 Male, age 76, right hemisphere 43.0
1796 Male, age 53, unknown 42.6
1913 Female, age 42, unknown 42.1
2087 Female, age 72, unknown 41.7
1839 Male, age 51, unknown 41.2
2261 Male, age 18, unknown 40.8
2668 Female, age 75, unknown 40.4
1995 Male, age 72, unknown 38.7
2664 Male, age 75, both hemispheres 34.6
Ventral tegmental area
nTPM: 46.2
2410 Female, age 72, unknown 51.0
2218 Male, age 76, both hemispheres 49.8
2223 Female, age 72, unknown 47.4
1915 Female, age 42, unknown 46.2
2021 Male, age 53, unknown 41.9
1942 Male, age 51, unknown 41.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.8
Samples: 139

Max nTPM: 89.8
Min nTPM: 26.0
Std nTPM: 11.7
Median nTPM: 48.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 89.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 85.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 81.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 81.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 78.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 74.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 72.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 72.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 72.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 71.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 65.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 137.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 137.0
FF:10158-103A5 76 years, female 137.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.4
Pig sample Sample description nTPM
Midbrain
nTPM: 36.4
Samples: 4

Max nTPM: 46.5
Min nTPM: 28.8
Sample A Female 46.5
Sample B Female 30.3
Sample C Male 40.0
Sample D Male 28.8
Periaqueductal gray
nTPM: 31.5
Samples: 3

Max nTPM: 33.8
Min nTPM: 28.3
Sample B Female 32.4
Sample C Male 33.8
Sample D Male 28.3
Substantia nigra
nTPM: 30.1
Samples: 4

Max nTPM: 33.3
Min nTPM: 24.5
Sample A Female 32.5
Sample B Female 24.5
Sample C Male 33.3
Sample D Male 30.2
Superior colliculi
nTPM: 30.7
Samples: 4

Max nTPM: 34.5
Min nTPM: 27.6
Sample A Female 30.6
Sample B Female 27.6
Sample C Male 34.5
Sample D Male 30.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 31.0
Min nTPM: 28.3
Sample A Male 28.5
Sample B Male 28.5
Sample C Female 31.0
Sample D Female 28.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69549651 Antisense, RP_050315_01_C02, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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