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CLNS1A
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:79.9 nTPM
HPA:79.9 nTPM
GTEx:74.0 nTPM
FANTOM5:83.1 Scaled Tags Per Million
Pig:31.4 nTPM
Mouse:86.2 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA031707Antibody HPA031708Antibody HPA032045Antibody CAB017840
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells Not detectedLowMediumNot detected






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 79.9
Sample id Sample description nTPM
Hippocampus
nTPM: 79.9
2529 Female, age 94, left hemisphere 83.3
1898 Male, age 80, left hemisphere 83.1
1911 Female, age 85, right hemisphere 79.4
1855 Male, age 76, left hemisphere 78.7
2148 Female, age 91, left hemisphere 77.8
2621 Female, age 67, right hemisphere 77.3
Dentate gyrus
nTPM: 76.8
2010 Male, age 76, both hemispheres 81.0
2530 Female, age 94, left hemisphere 78.3
2528 Male, age 74, both hemispheres 77.1
2246 Female, age 85, both hemispheres 75.2
1927 Female, age 91, both hemispheres 74.9
2531 Female, age 67, both hemispheres 74.4
Entorhinal gyrus
nTPM: 78.8
2117 Female, age 91, right hemisphere 81.3
2686 Male, age 75, right hemisphere 80.8
2764 Male, age 80, right hemisphere 80.2
1938 Female, age 85, left hemisphere 80.1
1787 Male, age 76, left hemisphere 76.7
2613 Female, age 94, left hemisphere 73.5
Hippocampus, CA1
nTPM: 78.1
2749 Male, age 80, left hemisphere 78.6
2045 Male, age 76, both hemispheres 78.2
2527 Male, age 74, both hemispheres 78.1
1873 Female, age 85, both hemispheres 77.9
2082 Female, age 91, right hemisphere 77.9
Hippocampus, CA2
nTPM: 78.3
2249 Male, age 74, both hemispheres 81.7
1892 Male, age 76, both hemispheres 79.4
2437 Female, age 94, left hemisphere 79.2
2113 Female, age 91, right hemisphere 76.9
1963 Male, age 80, left hemisphere 76.7
1940 Female, age 85, left hemisphere 76.0
Hippocampus, CA3
nTPM: 76.4
1891 Female, age 85, both hemispheres 80.0
1867 Male, age 76, both hemispheres 79.4
2137 Male, age 80, left hemisphere 76.1
2861 Female, age 67, both hemispheres 75.8
2436 Male, age 74, both hemispheres 75.4
2620 Female, age 94, left hemisphere 71.6
Parahippocampal cortex
nTPM: 78.3
1850 Male, age 80, both hemispheres 82.2
2018 Male, age 76, both hemispheres 80.7
2692 Male, age 74, both hemispheres 79.3
2250 Female, age 67, right hemisphere 78.5
2245 Female, age 91, both hemispheres 78.3
1933 Female, age 85, both hemispheres 78.0
1990 Female, age 91, right hemisphere 77.3
2532 Female, age 72, left hemisphere 77.3
2622 Female, age 67, right hemisphere 76.1
2693 Female, age 94, both hemispheres 75.0
Perirhinal gyrus
nTPM: 79.8
1847 Female, age 91, left hemisphere 83.7
1794 Male, age 80, right hemisphere 80.5
1841 Female, age 85, right hemisphere 80.5
2848 Male, age 76, right hemisphere 78.9
2521 Female, age 94, right hemisphere 75.5
Subiculum
nTPM: 78.4
2729 Female, age 91, right hemisphere 81.8
2042 Male, age 76, both hemispheres 80.4
1901 Male, age 80, both hemispheres 80.1
1977 Female, age 85, both hemispheres 78.1
2619 Male, age 74, both hemispheres 76.6
2438 Female, age 94, left hemisphere 73.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 74.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 74.0
Samples: 197

Max nTPM: 138.7
Min nTPM: 33.6
Std nTPM: 15.4
Median nTPM: 71.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 138.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 118.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 116.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 115.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 108.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 106.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 106.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 105.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 104.4
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 102.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 100.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 83.1
FF:10153-102I9 76 years, female 83.6
FF:10169-103B7 60 years, female 82.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.6
Samples: 4

Max nTPM: 35.2
Min nTPM: 28.1
Sample A Female 35.2
Sample B Female 30.3
Sample C Male 28.1
Sample D Male 28.6
Entorhinal cortex
nTPM: 31.4
Samples: 4

Max nTPM: 40.8
Min nTPM: 26.3
Sample A Female 27.6
Sample B Female 40.8
Sample C Male 26.3
Sample D Male 31.0
Subiculum
nTPM: 27.2
Samples: 4

Max nTPM: 29.5
Min nTPM: 25.8
Sample A Female 29.5
Sample B Female 25.8
Sample C Male 26.3
Sample D Male 27.1
Ventral hippocampus
nTPM: 26.6
Samples: 4

Max nTPM: 28.4
Min nTPM: 23.5
Sample A Female 28.2
Sample B Female 23.5
Sample C Male 28.4
Sample D Male 26.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 86.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 77.3
Samples: 4

Max nTPM: 80.7
Min nTPM: 72.6
Sample A Male 72.6
Sample B Male 80.1
Sample C Female 80.7
Sample D Female 75.8
Hippocampal formation
nTPM: 86.3
Samples: 4

Max nTPM: 99.3
Min nTPM: 80.0
Sample A Male 99.3
Sample B Male 80.0
Sample C Female 83.1
Sample D Female 82.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
294043 Antisense, RP_040617_02_F01, Mouse strain C57BL/6J (56 days, male) 3.2
67881553 Antisense, RP_041018_01_E10, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.