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GRAMD4
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.9 nTPM
HPA:15.9 nTPM
GTEx:15.8 nTPM
FANTOM5:30.0 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:16.5 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.5
2289 Male, age 61, right hemisphere 13.5
1781 Male, age 74, unknown 8.8
2288 Male, age 75, left hemisphere 8.3
2481 Female, age 94, left hemisphere 6.5
2846 Female, age 79, unknown 6.4
2290 Female, age 72, unknown 5.8
1854 Male, age 80, left hemisphere 5.5
1857 Female, age 85, left hemisphere 5.5
Claustrum
nTPM: 12.7
2645 Female, age 72, unknown 16.4
2491 Male, age 75, both hemispheres 16.2
1956 Male, age 74, unknown 15.7
2568 Male, age 61, both hemispheres 15.7
2284 Female, age 91, both hemispheres 12.5
2198 Male, age 80, both hemispheres 10.6
2292 Female, age 85, both hemispheres 9.7
2392 Female, age 94, both hemispheres 9.5
2196 Female, age 79, unknown 8.3
Globus pallidus, externus
nTPM: 9.2
2772 Female, age 79, unknown 12.8
2646 Male, age 61, right hemisphere 10.4
2567 Female, age 72, unknown 9.8
2395 Male, age 75, both hemispheres 7.7
1996 Male, age 80, right hemisphere 5.4
Globus pallidus, internus
nTPM: 5.9
2566 Female, age 72, unknown 8.8
1818 Male, age 74, unknown 7.4
2037 Male, age 80, right hemisphere 7.1
2111 Female, age 85, right hemisphere 6.1
2483 Female, age 94, right hemisphere 4.5
2778 Female, age 91, both hemispheres 4.1
2287 Male, age 75, right hemisphere 3.1
Nucleus accumbens
nTPM: 5.8
2732 Male, age 80, right hemisphere 10.1
2824 Male, age 61, right hemisphere 6.8
1806 Female, age 85, left hemisphere 6.7
1783 Male, age 74, unknown 5.8
1856 Female, age 91, right hemisphere 5.8
2286 Male, age 75, left hemisphere 5.6
2698 Female, age 72, unknown 3.0
2391 Female, age 94, left hemisphere 2.5
Nucleus basalis of Meynert
nTPM: 7.9
2569 Male, age 61, both hemispheres 12.6
2484 Female, age 94, left hemisphere 8.7
2821 Male, age 75, both hemispheres 5.6
2393 Male, age 80, right hemisphere 4.8
Nucleus of the diagonal band
nTPM: 15.7
2775 Male, age 80, right hemisphere 19.8
2029 Male, age 61, right hemisphere 19.6
2195 Female, age 85, both hemispheres 15.6
1812 Female, age 91, both hemispheres 14.0
1979 Male, age 74, unknown 9.5
Olfactory tubercle
nTPM: 15.7
1998 Female, age 91, both hemispheres 18.6
2487 Female, age 94, left hemisphere 16.7
1846 Male, age 80, right hemisphere 15.4
2856 Male, age 75, right hemisphere 11.9
Putamen
nTPM: 7.3
2647 Male, age 75, left hemisphere 13.5
2489 Female, age 72, unknown 9.4
2466 Female, age 79, unknown 7.4
1937 Female, age 91, right hemisphere 6.9
2482 Female, age 94, left hemisphere 5.5
1829 Male, age 74, unknown 4.3
1838 Male, age 80, right hemisphere 4.1
Septal nuclei
nTPM: 15.9
1960 Male, age 74, unknown 24.4
2059 Female, age 85, both hemispheres 21.2
2031 Female, age 72, unknown 18.4
2629 Female, age 94, right hemisphere 16.4
2009 Female, age 91, both hemispheres 15.4
2199 Male, age 80, right hemisphere 9.2
2394 Male, age 61, left hemisphere 6.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.8
Samples: 246

Max nTPM: 37.7
Min nTPM: 5.9
Std nTPM: 5.2
Median nTPM: 15.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 37.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 34.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 33.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 31.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 31.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 29.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 29.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 28.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 27.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 27.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 27.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.5
Samples: 246

Max nTPM: 36.7
Min nTPM: 6.6
Std nTPM: 4.8
Median nTPM: 14.8
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 36.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 34.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 33.0
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 31.3
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 30.8
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 29.9
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 28.2
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 27.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 27.3
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 26.1
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 26.0
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Brain - Putamen (basal ganglia)
Average nTPM: 14.7
Samples: 205

Max nTPM: 34.6
Min nTPM: 4.8
Std nTPM: 5.0
Median nTPM: 14.0
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 34.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 31.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 29.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 27.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 26.6
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 26.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 25.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 25.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 25.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 24.8
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 24.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.5
FF:10164-103B2 76 years, female 22.5
Globus pallidus
Scaled Tags Per Million: 15.9
FF:10175-103C4 60 years, female 17.3
FF:10161-103A8 76 years, female 14.4
Nucleus accumbens
Scaled Tags Per Million: 30.0
FF:10037-101F1 23-56 years, mixed 30.0
Putamen
Scaled Tags Per Million: 20.4
FF:10176-103C5 60 years, female 20.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.5
Pig sample Sample description nTPM
Caudate
nTPM: 7.5
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 7.7
Sample C Male 8.2
Sample D Male 7.4
Putamen
nTPM: 7.1
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.6
Sample A Female 7.9
Sample B Female 5.6
Sample C Male 6.6
Sample D Male 8.3
Septum
nTPM: 7.1
Samples: 4

Max nTPM: 7.3
Min nTPM: 6.9
Sample A Female 7.3
Sample B Female 7.0
Sample C Male 7.3
Sample D Male 6.9
Ventral pallidum
nTPM: 7.5
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.0
Sample A Female 6.5
Sample B Female 6.0
Sample C Male 9.4
Sample D Male 8.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.1
Samples: 4

Max nTPM: 17.1
Min nTPM: 14.6
Sample A Male 16.3
Sample B Male 17.1
Sample C Female 16.5
Sample D Female 14.6
Septum
nTPM: 13.4
Samples: 4

Max nTPM: 16.9
Min nTPM: 11.4
Sample A Male 16.9
Sample B Male 12.4
Sample C Female 11.4
Sample D Female 12.7
Ventral forebrain
nTPM: 16.5
Samples: 4

Max nTPM: 19.1
Min nTPM: 13.5
Sample A Male 19.1
Sample B Male 16.7
Sample C Female 13.5
Sample D Female 16.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
69528553 Antisense, RP_050421_03_B11, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.1
69528553 Antisense, RP_050421_03_B11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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