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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.0 nTPM
HPA:15.0 nTPM
GTEx:31.8 nTPM
FANTOM5:76.7 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:36.8 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.1
1870 Female, age 42, unknown 15.5
2019 Male, age 18, unknown 15.5
2828 Female, age 72, unknown 14.4
2666 Male, age 74, left hemisphere 14.3
2219 Male, age 76, both hemispheres 13.7
1827 Male, age 72, unknown 13.6
1830 Male, age 51, unknown 13.6
2411 Female, age 72, unknown 13.6
2586 Male, age 75, left hemisphere 13.5
1833 Male, age 53, unknown 13.4
Dorsal raphe nucleus
nTPM: 13.8
2750 Male, age 76, both hemispheres 14.4
1828 Male, age 53, unknown 14.3
2016 Female, age 72, unknown 13.6
2298 Female, age 72, unknown 13.4
2047 Male, age 72, unknown 13.3
Inferior colliculus
nTPM: 14.4
1848 Female, age 42, unknown 14.9
1890 Male, age 53, unknown 14.6
2097 Female, age 72, unknown 14.2
2849 Male, age 72, unknown 14.0
Median raphe nucleus
nTPM: 14.9
2220 Male, age 76, midline 14.9
Pedunculopontine tegmental nucleus
nTPM: 13.0
1921 Female, age 85, both hemispheres 14.0
2334 Male, age 80, both hemispheres 13.1
2338 Male, age 61, both hemispheres 11.9
Periaquaductal grey, anterior
nTPM: 13.7
1795 Male, age 51, unknown 14.2
2502 Female, age 75, unknown 13.5
1947 Male, age 18, unknown 13.4
Periaquaductal grey, dorsal
nTPM: 13.6
2850 Male, age 76, both hemispheres 14.5
1840 Male, age 53, unknown 13.8
2464 Female, age 72, unknown 13.1
1831 Male, age 72, unknown 13.0
Periaquaductal grey, lateral
nTPM: 13.4
2140 Male, age 76, both hemispheres 14.4
2053 Male, age 18, unknown 13.5
2272 Male, age 74, both hemispheres 12.3
Pretectal area
nTPM: 14.3
1817 Female, age 42, unknown 16.6
2007 Male, age 72, unknown 15.5
1815 Male, age 53, unknown 15.1
2407 Male, age 75, both hemispheres 14.4
2667 Female, age 75, unknown 14.2
1944 Female, age 72, unknown 14.0
2316 Male, age 76, right hemisphere 13.7
1816 Male, age 51, unknown 13.5
2224 Female, age 72, unknown 13.4
2273 Male, age 74, both hemispheres 13.3
2825 Male, age 18, unknown 13.2
Red nucleus
nTPM: 14.8
1821 Female, age 72, unknown 15.8
2503 Female, age 72, unknown 15.6
2725 Female, age 75, unknown 15.4
1954 Female, age 42, unknown 15.3
2785 Male, age 18, unknown 15.2
2769 Male, age 72, unknown 15.1
1865 Male, age 51, unknown 14.4
2227 Male, age 72, unknown 14.4
1904 Male, age 53, unknown 14.2
2588 Male, age 74, left hemisphere 14.1
2584 Male, age 75, left hemisphere 14.0
2823 Male, age 76, right hemisphere 13.9
Substantia nigra
nTPM: 15.0
2241 Male, age 72, unknown 16.1
1916 Female, age 42, unknown 16.0
1851 Male, age 51, unknown 15.9
1941 Male, age 53, unknown 15.2
2590 Female, age 75, unknown 15.1
2409 Female, age 72, unknown 14.8
1889 Female, age 72, unknown 14.3
2583 Male, age 75, right hemisphere 14.3
2665 Male, age 74, both hemispheres 14.0
2699 Male, age 18, unknown 14.0
Superior colliculus
nTPM: 13.8
1895 Male, age 76, right hemisphere 14.3
1839 Male, age 51, unknown 14.2
2261 Male, age 18, unknown 14.0
2087 Female, age 72, unknown 13.9
2587 Male, age 74, left hemisphere 13.9
1995 Male, age 72, unknown 13.8
1796 Male, age 53, unknown 13.7
1913 Female, age 42, unknown 13.6
2668 Female, age 75, unknown 13.4
2664 Male, age 75, both hemispheres 12.8
Ventral tegmental area
nTPM: 14.0
2218 Male, age 76, both hemispheres 15.1
2410 Female, age 72, unknown 14.7
2223 Female, age 72, unknown 13.9
1942 Male, age 51, unknown 13.6
1915 Female, age 42, unknown 13.3
2021 Male, age 53, unknown 13.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.8
Samples: 139

Max nTPM: 50.2
Min nTPM: 21.4
Std nTPM: 5.1
Median nTPM: 31.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 47.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 46.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 42.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 42.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 42.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 42.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 41.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 40.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 40.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 39.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.7
FF:10158-103A5 76 years, female 76.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.6
Pig sample Sample description nTPM
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 32.4
Min nTPM: 25.3
Sample A Female 29.6
Sample B Female 25.3
Sample C Male 32.4
Sample D Male 30.9
Periaqueductal gray
nTPM: 26.1
Samples: 3

Max nTPM: 27.4
Min nTPM: 24.9
Sample B Female 24.9
Sample C Male 27.4
Sample D Male 25.9
Substantia nigra
nTPM: 27.6
Samples: 4

Max nTPM: 30.1
Min nTPM: 23.6
Sample A Female 27.4
Sample B Female 23.6
Sample C Male 30.1
Sample D Male 29.2
Superior colliculi
nTPM: 29.2
Samples: 4

Max nTPM: 33.2
Min nTPM: 23.2
Sample A Female 29.5
Sample B Female 23.2
Sample C Male 33.2
Sample D Male 30.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.8
Samples: 4

Max nTPM: 37.9
Min nTPM: 35.7
Sample A Male 35.7
Sample B Male 35.9
Sample C Female 37.7
Sample D Female 37.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
67881765 Antisense, RP_040920_02_G03, Mouse strain C57BL/6J (56 days, male) 7.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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