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TPD52
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:40.2 nTPM
HPA:40.2 nTPM
GTEx:37.5 nTPM
FANTOM5:94.3 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA028427Antibody HPA062167
Glial cells LowLow
Neuronal cells LowNot detected




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 27.8
1781 Male, age 74, unknown 32.7
2846 Female, age 79, unknown 32.5
2288 Male, age 75, left hemisphere 32.1
1857 Female, age 85, left hemisphere 28.5
1854 Male, age 80, left hemisphere 26.9
2290 Female, age 72, unknown 26.1
2481 Female, age 94, left hemisphere 22.5
2289 Male, age 61, right hemisphere 20.9
Claustrum
nTPM: 40.2
2392 Female, age 94, both hemispheres 51.5
2491 Male, age 75, both hemispheres 46.9
1956 Male, age 74, unknown 43.1
2198 Male, age 80, both hemispheres 39.3
2568 Male, age 61, both hemispheres 38.0
2284 Female, age 91, both hemispheres 36.9
2196 Female, age 79, unknown 36.7
2292 Female, age 85, both hemispheres 35.7
2645 Female, age 72, unknown 33.4
Globus pallidus, externus
nTPM: 28.8
2395 Male, age 75, both hemispheres 37.2
2772 Female, age 79, unknown 29.5
1996 Male, age 80, right hemisphere 27.5
2567 Female, age 72, unknown 26.5
2646 Male, age 61, right hemisphere 23.5
Globus pallidus, internus
nTPM: 32.7
2287 Male, age 75, right hemisphere 44.5
2778 Female, age 91, both hemispheres 38.5
2111 Female, age 85, right hemisphere 32.5
2566 Female, age 72, unknown 29.7
2483 Female, age 94, right hemisphere 29.3
1818 Male, age 74, unknown 28.2
2037 Male, age 80, right hemisphere 26.1
Nucleus accumbens
nTPM: 30.6
2391 Female, age 94, left hemisphere 34.9
1856 Female, age 91, right hemisphere 34.4
2698 Female, age 72, unknown 32.2
1783 Male, age 74, unknown 31.7
2286 Male, age 75, left hemisphere 30.5
1806 Female, age 85, left hemisphere 29.8
2824 Male, age 61, right hemisphere 29.0
2732 Male, age 80, right hemisphere 22.6
Nucleus basalis of Meynert
nTPM: 27.0
2821 Male, age 75, both hemispheres 30.6
2393 Male, age 80, right hemisphere 28.8
2484 Female, age 94, left hemisphere 28.1
2569 Male, age 61, both hemispheres 20.6
Nucleus of the diagonal band
nTPM: 39.6
2195 Female, age 85, both hemispheres 45.7
1812 Female, age 91, both hemispheres 43.5
2029 Male, age 61, right hemisphere 41.9
2775 Male, age 80, right hemisphere 41.6
1979 Male, age 74, unknown 25.5
Olfactory tubercle
nTPM: 39.3
1998 Female, age 91, both hemispheres 43.3
1846 Male, age 80, right hemisphere 39.6
2487 Female, age 94, left hemisphere 37.8
2856 Male, age 75, right hemisphere 36.5
Putamen
nTPM: 28.3
1937 Female, age 91, right hemisphere 30.8
2466 Female, age 79, unknown 30.8
2647 Male, age 75, left hemisphere 30.0
1838 Male, age 80, right hemisphere 29.8
1829 Male, age 74, unknown 29.5
2482 Female, age 94, left hemisphere 24.9
2489 Female, age 72, unknown 22.4
Septal nuclei
nTPM: 33.6
2031 Female, age 72, unknown 44.1
1960 Male, age 74, unknown 40.3
2009 Female, age 91, both hemispheres 35.9
2629 Female, age 94, right hemisphere 35.6
2394 Male, age 61, left hemisphere 28.5
2059 Female, age 85, both hemispheres 28.3
2199 Male, age 80, right hemisphere 22.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.0
Samples: 246

Max nTPM: 105.9
Min nTPM: 9.4
Std nTPM: 13.1
Median nTPM: 31.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 105.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 95.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 77.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 65.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 63.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 59.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 57.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 56.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 56.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 55.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 54.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.5
Samples: 246

Max nTPM: 81.7
Min nTPM: 8.1
Std nTPM: 12.3
Median nTPM: 38.9
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 81.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 73.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 71.8
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 64.3
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 63.3
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 61.5
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 60.7
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 60.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 60.0
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 57.8
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 57.1
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Brain - Putamen (basal ganglia)
Average nTPM: 34.2
Samples: 205

Max nTPM: 80.3
Min nTPM: 10.7
Std nTPM: 11.6
Median nTPM: 33.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 80.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 76.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 68.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 63.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 58.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 57.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 57.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 56.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 55.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 54.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 54.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 73.1
FF:10164-103B2 76 years, female 73.1
Globus pallidus
Scaled Tags Per Million: 83.1
FF:10161-103A8 76 years, female 87.2
FF:10175-103C4 60 years, female 78.9
Nucleus accumbens
Scaled Tags Per Million: 94.3
FF:10037-101F1 23-56 years, mixed 94.3
Putamen
Scaled Tags Per Million: 84.3
FF:10176-103C5 60 years, female 84.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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