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TM9SF3
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:33.0 nTPM
HPA:33.0 nTPM
GTEx:25.3 nTPM
FANTOM5:72.6 Scaled Tags Per Million
Pig:67.3 nTPM
Mouse:119.3 nTPM
Allen mouse:10.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039609
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 33.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.0
2481 Female, age 94, left hemisphere 36.0
2288 Male, age 75, left hemisphere 33.3
1857 Female, age 85, left hemisphere 30.3
2846 Female, age 79, unknown 29.0
1854 Male, age 80, left hemisphere 27.9
2290 Female, age 72, unknown 27.1
1781 Male, age 74, unknown 25.2
2289 Male, age 61, right hemisphere 23.5
Claustrum
nTPM: 25.5
2392 Female, age 94, both hemispheres 29.0
1956 Male, age 74, unknown 28.7
2198 Male, age 80, both hemispheres 26.9
2491 Male, age 75, both hemispheres 26.2
2196 Female, age 79, unknown 25.9
2292 Female, age 85, both hemispheres 25.9
2284 Female, age 91, both hemispheres 22.9
2568 Male, age 61, both hemispheres 22.7
2645 Female, age 72, unknown 21.3
Globus pallidus, externus
nTPM: 30.2
1996 Male, age 80, right hemisphere 36.5
2772 Female, age 79, unknown 35.7
2395 Male, age 75, both hemispheres 35.1
2646 Male, age 61, right hemisphere 22.4
2567 Female, age 72, unknown 21.2
Globus pallidus, internus
nTPM: 33.0
2287 Male, age 75, right hemisphere 41.0
2778 Female, age 91, both hemispheres 37.9
1818 Male, age 74, unknown 32.8
2037 Male, age 80, right hemisphere 32.1
2483 Female, age 94, right hemisphere 31.9
2111 Female, age 85, right hemisphere 31.5
2566 Female, age 72, unknown 23.6
Nucleus accumbens
nTPM: 28.8
2391 Female, age 94, left hemisphere 38.0
2286 Male, age 75, left hemisphere 34.3
1806 Female, age 85, left hemisphere 30.2
2698 Female, age 72, unknown 28.7
1783 Male, age 74, unknown 25.6
1856 Female, age 91, right hemisphere 25.2
2732 Male, age 80, right hemisphere 24.4
2824 Male, age 61, right hemisphere 23.8
Nucleus basalis of Meynert
nTPM: 26.3
2821 Male, age 75, both hemispheres 27.8
2393 Male, age 80, right hemisphere 27.2
2484 Female, age 94, left hemisphere 27.2
2569 Male, age 61, both hemispheres 22.9
Nucleus of the diagonal band
nTPM: 27.5
1812 Female, age 91, both hemispheres 31.7
2775 Male, age 80, right hemisphere 28.6
2195 Female, age 85, both hemispheres 26.7
1979 Male, age 74, unknown 25.8
2029 Male, age 61, right hemisphere 24.4
Olfactory tubercle
nTPM: 26.1
1846 Male, age 80, right hemisphere 30.1
2487 Female, age 94, left hemisphere 25.8
1998 Female, age 91, both hemispheres 24.6
2856 Male, age 75, right hemisphere 23.9
Putamen
nTPM: 26.3
2482 Female, age 94, left hemisphere 32.6
1937 Female, age 91, right hemisphere 28.0
1829 Male, age 74, unknown 26.8
2466 Female, age 79, unknown 25.7
1838 Male, age 80, right hemisphere 25.3
2647 Male, age 75, left hemisphere 23.1
2489 Female, age 72, unknown 22.5
Septal nuclei
nTPM: 26.4
2031 Female, age 72, unknown 29.5
2009 Female, age 91, both hemispheres 27.8
2199 Male, age 80, right hemisphere 27.1
1960 Male, age 74, unknown 26.7
2394 Male, age 61, left hemisphere 25.5
2629 Female, age 94, right hemisphere 24.6
2059 Female, age 85, both hemispheres 23.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.7
Samples: 246

Max nTPM: 38.7
Min nTPM: 16.8
Std nTPM: 3.7
Median nTPM: 24.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 38.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 37.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 37.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 35.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 34.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 34.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 34.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 34.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 33.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 33.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 33.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.5
Samples: 246

Max nTPM: 44.4
Min nTPM: 15.2
Std nTPM: 4.0
Median nTPM: 21.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 44.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 35.1
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 33.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 33.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 33.0
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 32.9
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 32.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 32.5
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 32.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 31.7
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 30.9
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Brain - Putamen (basal ganglia)
Average nTPM: 25.3
Samples: 205

Max nTPM: 37.2
Min nTPM: 18.6
Std nTPM: 3.8
Median nTPM: 24.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 37.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 36.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 35.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 34.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 34.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 33.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 33.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 33.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 32.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 32.7
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 32.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 72.6
FF:10164-103B2 76 years, female 72.6
Globus pallidus
Scaled Tags Per Million: 64.1
FF:10161-103A8 76 years, female 79.3
FF:10175-103C4 60 years, female 48.9
Nucleus accumbens
Scaled Tags Per Million: 72.4
FF:10037-101F1 23-56 years, mixed 72.4
Putamen
Scaled Tags Per Million: 71.7
FF:10176-103C5 60 years, female 71.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 67.3
Pig sample Sample description nTPM
Caudate
nTPM: 48.2
Samples: 4

Max nTPM: 51.0
Min nTPM: 44.7
Sample A Female 51.0
Sample B Female 44.7
Sample C Male 49.2
Sample D Male 47.7
Putamen
nTPM: 67.3
Samples: 4

Max nTPM: 81.7
Min nTPM: 51.9
Sample A Female 78.1
Sample B Female 51.9
Sample C Male 81.7
Sample D Male 57.6
Septum
nTPM: 60.9
Samples: 4

Max nTPM: 69.9
Min nTPM: 54.9
Sample A Female 63.7
Sample B Female 54.9
Sample C Male 69.9
Sample D Male 54.9
Ventral pallidum
nTPM: 57.2
Samples: 4

Max nTPM: 60.9
Min nTPM: 51.7
Sample A Female 51.7
Sample B Female 58.4
Sample C Male 60.9
Sample D Male 57.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 119.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 111.2
Samples: 4

Max nTPM: 115.8
Min nTPM: 107.4
Sample A Male 113.1
Sample B Male 107.4
Sample C Female 108.6
Sample D Female 115.8
Septum
nTPM: 119.3
Samples: 4

Max nTPM: 125.7
Min nTPM: 106.9
Sample A Male 106.9
Sample B Male 122.3
Sample C Female 122.1
Sample D Female 125.7
Ventral forebrain
nTPM: 103.1
Samples: 4

Max nTPM: 106.9
Min nTPM: 98.3
Sample A Male 98.3
Sample B Male 106.9
Sample C Female 103.2
Sample D Female 103.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.2
413788 Antisense, RP_040809_01_D09, Mouse strain C57BL/6J (56 days, male) 10.2
Pallidum
Expression energy: 9.0
413788 Antisense, RP_040809_01_D09, Mouse strain C57BL/6J (56 days, male) 9.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.