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SNRPA
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:36.6 nTPM
HPA:36.6 nTPM
GTEx:38.1 nTPM
FANTOM5:145.8 Scaled Tags Per Million
Pig:25.7 nTPM
Mouse:53.7 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA046440Antibody CAB004652
Glial cells MediumHigh
Neuronal cells HighHigh




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.6
2846 Female, age 79, unknown 38.7
2289 Male, age 61, right hemisphere 38.4
2290 Female, age 72, unknown 38.1
1857 Female, age 85, left hemisphere 37.0
2288 Male, age 75, left hemisphere 36.1
1854 Male, age 80, left hemisphere 35.9
1781 Male, age 74, unknown 35.5
2481 Female, age 94, left hemisphere 33.2
Claustrum
nTPM: 31.8
2196 Female, age 79, unknown 33.0
2292 Female, age 85, both hemispheres 32.8
2284 Female, age 91, both hemispheres 32.5
2198 Male, age 80, both hemispheres 32.4
2568 Male, age 61, both hemispheres 31.9
1956 Male, age 74, unknown 31.7
2392 Female, age 94, both hemispheres 30.8
2645 Female, age 72, unknown 30.8
2491 Male, age 75, both hemispheres 30.5
Globus pallidus, externus
nTPM: 33.9
1996 Male, age 80, right hemisphere 36.2
2646 Male, age 61, right hemisphere 35.2
2395 Male, age 75, both hemispheres 33.9
2772 Female, age 79, unknown 33.7
2567 Female, age 72, unknown 30.8
Globus pallidus, internus
nTPM: 34.2
2287 Male, age 75, right hemisphere 36.1
2037 Male, age 80, right hemisphere 35.2
2778 Female, age 91, both hemispheres 35.2
1818 Male, age 74, unknown 34.5
2483 Female, age 94, right hemisphere 34.0
2566 Female, age 72, unknown 32.2
2111 Female, age 85, right hemisphere 31.8
Nucleus accumbens
nTPM: 36.2
2698 Female, age 72, unknown 39.2
1783 Male, age 74, unknown 37.2
1806 Female, age 85, left hemisphere 37.0
1856 Female, age 91, right hemisphere 37.0
2286 Male, age 75, left hemisphere 35.4
2824 Male, age 61, right hemisphere 35.4
2391 Female, age 94, left hemisphere 35.0
2732 Male, age 80, right hemisphere 33.2
Nucleus basalis of Meynert
nTPM: 34.8
2821 Male, age 75, both hemispheres 36.0
2484 Female, age 94, left hemisphere 34.8
2393 Male, age 80, right hemisphere 34.7
2569 Male, age 61, both hemispheres 33.8
Nucleus of the diagonal band
nTPM: 32.9
2195 Female, age 85, both hemispheres 34.5
1979 Male, age 74, unknown 34.4
1812 Female, age 91, both hemispheres 33.2
2775 Male, age 80, right hemisphere 31.5
2029 Male, age 61, right hemisphere 31.0
Olfactory tubercle
nTPM: 31.0
1998 Female, age 91, both hemispheres 31.9
1846 Male, age 80, right hemisphere 31.6
2856 Male, age 75, right hemisphere 30.6
2487 Female, age 94, left hemisphere 29.8
Putamen
nTPM: 36.0
1838 Male, age 80, right hemisphere 38.0
1829 Male, age 74, unknown 37.4
2466 Female, age 79, unknown 37.3
2489 Female, age 72, unknown 35.6
2482 Female, age 94, left hemisphere 35.3
1937 Female, age 91, right hemisphere 34.6
2647 Male, age 75, left hemisphere 34.1
Septal nuclei
nTPM: 32.3
1960 Male, age 74, unknown 33.2
2031 Female, age 72, unknown 32.9
2199 Male, age 80, right hemisphere 32.4
2629 Female, age 94, right hemisphere 32.1
2059 Female, age 85, both hemispheres 32.0
2009 Female, age 91, both hemispheres 31.9
2394 Male, age 61, left hemisphere 31.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.3
Samples: 246

Max nTPM: 58.5
Min nTPM: 17.7
Std nTPM: 7.1
Median nTPM: 33.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 58.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 56.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 54.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 53.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 53.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 52.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 49.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 48.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 48.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 48.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 47.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 38.1
Samples: 246

Max nTPM: 83.7
Min nTPM: 19.1
Std nTPM: 9.4
Median nTPM: 36.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 83.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 69.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 67.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 66.6
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 63.8
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 61.6
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 60.5
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 59.3
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 59.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 58.9
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 56.8
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Brain - Putamen (basal ganglia)
Average nTPM: 35.8
Samples: 205

Max nTPM: 63.2
Min nTPM: 19.5
Std nTPM: 8.2
Median nTPM: 34.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 63.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 59.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 57.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 56.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 54.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 54.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 53.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 53.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 53.3
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 52.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 50.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 145.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 135.5
FF:10164-103B2 76 years, female 135.5
Globus pallidus
Scaled Tags Per Million: 145.8
FF:10175-103C4 60 years, female 155.5
FF:10161-103A8 76 years, female 136.2
Nucleus accumbens
Scaled Tags Per Million: 72.1
FF:10037-101F1 23-56 years, mixed 72.1
Putamen
Scaled Tags Per Million: 135.2
FF:10176-103C5 60 years, female 135.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 25.7
Pig sample Sample description nTPM
Caudate
nTPM: 23.5
Samples: 4

Max nTPM: 29.0
Min nTPM: 20.4
Sample A Female 20.5
Sample B Female 24.2
Sample C Male 29.0
Sample D Male 20.4
Putamen
nTPM: 25.7
Samples: 4

Max nTPM: 31.2
Min nTPM: 21.1
Sample A Female 22.0
Sample B Female 21.1
Sample C Male 31.2
Sample D Male 28.5
Septum
nTPM: 23.0
Samples: 4

Max nTPM: 25.3
Min nTPM: 21.7
Sample A Female 22.6
Sample B Female 22.5
Sample C Male 21.7
Sample D Male 25.3
Ventral pallidum
nTPM: 22.7
Samples: 4

Max nTPM: 24.5
Min nTPM: 20.0
Sample A Female 20.0
Sample B Female 24.5
Sample C Male 24.2
Sample D Male 22.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 53.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 45.0
Samples: 4

Max nTPM: 57.5
Min nTPM: 35.3
Sample A Male 48.1
Sample B Male 57.5
Sample C Female 35.3
Sample D Female 38.9
Septum
nTPM: 53.7
Samples: 4

Max nTPM: 57.8
Min nTPM: 49.4
Sample A Male 53.4
Sample B Male 54.2
Sample C Female 57.8
Sample D Female 49.4
Ventral forebrain
nTPM: 49.1
Samples: 4

Max nTPM: 57.0
Min nTPM: 41.4
Sample A Male 54.2
Sample B Male 43.7
Sample C Female 57.0
Sample D Female 41.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
68076524 Antisense, RP_040923_02_D05, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.6
68076524 Antisense, RP_040923_02_D05, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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