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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:33.8 nTPM
HPA:33.8 nTPM
GTEx:48.3 nTPM
FANTOM5:102.0 Scaled Tags Per Million
Pig:32.2 nTPM
Mouse:76.1 nTPM
Allen mouse:3.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA034502Antibody HPA034503Antibody CAB012280
Glial cells LowMediumLow
Neuronal cells HighHighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 33.8
Sample id Sample description nTPM
Hippocampus
nTPM: 30.5
1898 Male, age 80, left hemisphere 38.8
2621 Female, age 67, right hemisphere 31.8
2529 Female, age 94, left hemisphere 30.2
1855 Male, age 76, left hemisphere 27.9
1911 Female, age 85, right hemisphere 27.3
2148 Female, age 91, left hemisphere 27.0
Dentate gyrus
nTPM: 29.0
1927 Female, age 91, both hemispheres 31.9
2010 Male, age 76, both hemispheres 31.6
2246 Female, age 85, both hemispheres 28.8
2528 Male, age 74, both hemispheres 28.8
2530 Female, age 94, left hemisphere 27.5
2531 Female, age 67, both hemispheres 25.2
Entorhinal gyrus
nTPM: 29.4
1938 Female, age 85, left hemisphere 31.5
2764 Male, age 80, right hemisphere 31.1
1787 Male, age 76, left hemisphere 29.6
2117 Female, age 91, right hemisphere 29.1
2613 Female, age 94, left hemisphere 28.1
2686 Male, age 75, right hemisphere 27.2
Hippocampus, CA1
nTPM: 30.3
2749 Male, age 80, left hemisphere 38.6
1873 Female, age 85, both hemispheres 31.3
2527 Male, age 74, both hemispheres 28.4
2045 Male, age 76, both hemispheres 26.7
2082 Female, age 91, right hemisphere 26.7
Hippocampus, CA2
nTPM: 31.6
1892 Male, age 76, both hemispheres 38.4
1963 Male, age 80, left hemisphere 35.9
2249 Male, age 74, both hemispheres 31.2
1940 Female, age 85, left hemisphere 30.3
2437 Female, age 94, left hemisphere 27.8
2113 Female, age 91, right hemisphere 26.3
Hippocampus, CA3
nTPM: 29.9
1867 Male, age 76, both hemispheres 34.5
2137 Male, age 80, left hemisphere 32.7
1891 Female, age 85, both hemispheres 30.2
2436 Male, age 74, both hemispheres 30.0
2620 Female, age 94, left hemisphere 27.3
2861 Female, age 67, both hemispheres 25.1
Parahippocampal cortex
nTPM: 29.4
1850 Male, age 80, both hemispheres 36.7
1990 Female, age 91, right hemisphere 33.5
2693 Female, age 94, both hemispheres 30.2
1933 Female, age 85, both hemispheres 29.9
2018 Male, age 76, both hemispheres 28.7
2245 Female, age 91, both hemispheres 28.6
2692 Male, age 74, both hemispheres 28.3
2250 Female, age 67, right hemisphere 26.9
2532 Female, age 72, left hemisphere 26.7
2622 Female, age 67, right hemisphere 25.0
Perirhinal gyrus
nTPM: 33.8
1847 Female, age 91, left hemisphere 40.1
1794 Male, age 80, right hemisphere 35.3
1841 Female, age 85, right hemisphere 34.0
2848 Male, age 76, right hemisphere 29.9
2521 Female, age 94, right hemisphere 29.8
Subiculum
nTPM: 29.1
1901 Male, age 80, both hemispheres 33.3
1977 Female, age 85, both hemispheres 31.3
2619 Male, age 74, both hemispheres 28.9
2438 Female, age 94, left hemisphere 28.6
2042 Male, age 76, both hemispheres 28.0
2729 Female, age 91, right hemisphere 24.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 48.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 48.3
Samples: 197

Max nTPM: 90.5
Min nTPM: 28.7
Std nTPM: 11.3
Median nTPM: 46.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 90.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 81.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 78.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 77.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 76.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 75.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 71.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 71.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 70.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 70.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 69.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 102.0
FF:10169-103B7 60 years, female 136.0
FF:10153-102I9 76 years, female 68.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 32.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 32.2
Samples: 4

Max nTPM: 37.0
Min nTPM: 27.1
Sample A Female 37.0
Sample B Female 33.8
Sample C Male 31.0
Sample D Male 27.1
Entorhinal cortex
nTPM: 25.6
Samples: 4

Max nTPM: 30.1
Min nTPM: 22.1
Sample A Female 26.8
Sample B Female 30.1
Sample C Male 23.3
Sample D Male 22.1
Subiculum
nTPM: 22.9
Samples: 4

Max nTPM: 27.6
Min nTPM: 20.9
Sample A Female 27.6
Sample B Female 21.4
Sample C Male 20.9
Sample D Male 21.5
Ventral hippocampus
nTPM: 25.4
Samples: 4

Max nTPM: 37.2
Min nTPM: 19.4
Sample A Female 23.9
Sample B Female 21.1
Sample C Male 19.4
Sample D Male 37.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 76.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 76.2
Samples: 4

Max nTPM: 81.7
Min nTPM: 70.5
Sample A Male 70.5
Sample B Male 78.5
Sample C Female 73.9
Sample D Female 81.7
Hippocampal formation
nTPM: 75.8
Samples: 4

Max nTPM: 86.1
Min nTPM: 70.1
Sample A Male 86.1
Sample B Male 74.4
Sample C Female 70.1
Sample D Female 72.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.5
71723912 Antisense, RP_050921_01_B07, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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