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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.7 nTPM
HPA:30.7 nTPM
GTEx:29.6 nTPM
FANTOM5:105.0 Scaled Tags Per Million
Pig:37.3 nTPM
Mouse:44.8 nTPM
Allen mouse:5.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 30.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.5
1781 Male, age 74, unknown 32.9
1857 Female, age 85, left hemisphere 32.9
1854 Male, age 80, left hemisphere 31.4
2846 Female, age 79, unknown 31.3
2290 Female, age 72, unknown 30.7
2481 Female, age 94, left hemisphere 28.3
2288 Male, age 75, left hemisphere 28.2
2289 Male, age 61, right hemisphere 28.0
Claustrum
nTPM: 26.7
2196 Female, age 79, unknown 30.4
2392 Female, age 94, both hemispheres 29.9
2491 Male, age 75, both hemispheres 27.3
1956 Male, age 74, unknown 26.5
2198 Male, age 80, both hemispheres 26.3
2568 Male, age 61, both hemispheres 26.0
2284 Female, age 91, both hemispheres 25.6
2645 Female, age 72, unknown 24.6
2292 Female, age 85, both hemispheres 23.5
Globus pallidus, externus
nTPM: 27.1
2395 Male, age 75, both hemispheres 30.1
2772 Female, age 79, unknown 28.8
1996 Male, age 80, right hemisphere 25.6
2646 Male, age 61, right hemisphere 25.5
2567 Female, age 72, unknown 25.3
Globus pallidus, internus
nTPM: 27.4
2483 Female, age 94, right hemisphere 31.0
2287 Male, age 75, right hemisphere 30.2
2778 Female, age 91, both hemispheres 28.9
2566 Female, age 72, unknown 26.1
2037 Male, age 80, right hemisphere 25.1
2111 Female, age 85, right hemisphere 25.1
1818 Male, age 74, unknown 25.0
Nucleus accumbens
nTPM: 30.5
1856 Female, age 91, right hemisphere 33.6
2824 Male, age 61, right hemisphere 33.6
1783 Male, age 74, unknown 32.8
1806 Female, age 85, left hemisphere 31.7
2698 Female, age 72, unknown 29.3
2286 Male, age 75, left hemisphere 28.5
2732 Male, age 80, right hemisphere 27.4
2391 Female, age 94, left hemisphere 27.2
Nucleus basalis of Meynert
nTPM: 28.7
2484 Female, age 94, left hemisphere 30.8
2393 Male, age 80, right hemisphere 29.8
2821 Male, age 75, both hemispheres 27.7
2569 Male, age 61, both hemispheres 26.7
Nucleus of the diagonal band
nTPM: 30.7
1812 Female, age 91, both hemispheres 33.4
2775 Male, age 80, right hemisphere 31.7
2029 Male, age 61, right hemisphere 30.5
2195 Female, age 85, both hemispheres 29.6
1979 Male, age 74, unknown 28.1
Olfactory tubercle
nTPM: 29.8
1998 Female, age 91, both hemispheres 30.9
1846 Male, age 80, right hemisphere 30.8
2487 Female, age 94, left hemisphere 30.5
2856 Male, age 75, right hemisphere 26.9
Putamen
nTPM: 30.1
1838 Male, age 80, right hemisphere 33.3
2466 Female, age 79, unknown 32.3
1937 Female, age 91, right hemisphere 32.1
1829 Male, age 74, unknown 29.2
2482 Female, age 94, left hemisphere 29.0
2647 Male, age 75, left hemisphere 27.7
2489 Female, age 72, unknown 27.2
Septal nuclei
nTPM: 28.8
2031 Female, age 72, unknown 31.4
2009 Female, age 91, both hemispheres 30.8
2629 Female, age 94, right hemisphere 30.0
1960 Male, age 74, unknown 29.6
2199 Male, age 80, right hemisphere 27.0
2394 Male, age 61, left hemisphere 26.8
2059 Female, age 85, both hemispheres 26.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.8
Samples: 246

Max nTPM: 53.4
Min nTPM: 13.9
Std nTPM: 7.4
Median nTPM: 26.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 53.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 52.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 50.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 49.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 48.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 47.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 43.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 42.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 41.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 41.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 41.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.6
Samples: 246

Max nTPM: 60.2
Min nTPM: 9.6
Std nTPM: 7.6
Median nTPM: 29.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 60.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 51.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 51.0
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 48.3
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 48.2
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 47.8
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 47.7
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 47.2
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 46.8
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 46.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 45.2
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Brain - Putamen (basal ganglia)
Average nTPM: 26.0
Samples: 205

Max nTPM: 60.6
Min nTPM: 11.4
Std nTPM: 7.6
Median nTPM: 24.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 60.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 50.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 49.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 48.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 47.9
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 43.7
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 42.8
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 42.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 39.5
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 39.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 39.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 105.0
FF:10164-103B2 76 years, female 105.0
Globus pallidus
Scaled Tags Per Million: 71.6
FF:10175-103C4 60 years, female 89.1
FF:10161-103A8 76 years, female 54.0
Nucleus accumbens
Scaled Tags Per Million: 59.7
FF:10037-101F1 23-56 years, mixed 59.7
Putamen
Scaled Tags Per Million: 94.9
FF:10176-103C5 60 years, female 94.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.3
Pig sample Sample description nTPM
Caudate
nTPM: 37.3
Samples: 4

Max nTPM: 40.1
Min nTPM: 32.8
Sample A Female 40.1
Sample B Female 36.6
Sample C Male 39.7
Sample D Male 32.8
Putamen
nTPM: 34.2
Samples: 4

Max nTPM: 43.2
Min nTPM: 29.5
Sample A Female 33.0
Sample B Female 31.1
Sample C Male 43.2
Sample D Male 29.5
Septum
nTPM: 34.0
Samples: 4

Max nTPM: 43.7
Min nTPM: 24.4
Sample A Female 43.7
Sample B Female 35.0
Sample C Male 32.9
Sample D Male 24.4
Ventral pallidum
nTPM: 32.8
Samples: 4

Max nTPM: 38.7
Min nTPM: 26.6
Sample A Female 38.7
Sample B Female 32.8
Sample C Male 26.6
Sample D Male 33.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 44.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 42.2
Samples: 4

Max nTPM: 46.1
Min nTPM: 38.3
Sample A Male 43.5
Sample B Male 38.3
Sample C Female 46.1
Sample D Female 41.0
Septum
nTPM: 42.1
Samples: 4

Max nTPM: 44.5
Min nTPM: 39.5
Sample A Male 39.5
Sample B Male 44.5
Sample C Female 44.3
Sample D Female 40.0
Ventral forebrain
nTPM: 44.8
Samples: 4

Max nTPM: 46.1
Min nTPM: 42.1
Sample A Male 45.0
Sample B Male 42.1
Sample C Female 46.1
Sample D Female 46.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.0
68861960 Antisense, RP_050301_01_C04, Mouse strain C57BL/6J (56 days, male) 5.0
70231304 Antisense, RP_050301_01_C04, Mouse strain C57BL/6J (56 days, male) 2.2
Pallidum
Expression energy: 3.4
68861960 Antisense, RP_050301_01_C04, Mouse strain C57BL/6J (56 days, male) 3.4
70231304 Antisense, RP_050301_01_C04, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.