ABOUTMENU
HELP
NEWS
COL16A1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.7 nTPM
HPA:44.7 nTPM
GTEx:25.1 nTPM
FANTOM5:22.0 Scaled Tags Per Million
Pig:5.2 nTPM
Mouse:1.5 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.6
1781 Male, age 74, unknown 15.1
2289 Male, age 61, right hemisphere 14.7
2481 Female, age 94, left hemisphere 13.8
1854 Male, age 80, left hemisphere 12.4
2288 Male, age 75, left hemisphere 11.7
2846 Female, age 79, unknown 9.3
1857 Female, age 85, left hemisphere 8.2
2290 Female, age 72, unknown 8.0
Claustrum
nTPM: 22.6
2292 Female, age 85, both hemispheres 38.1
2645 Female, age 72, unknown 24.3
2196 Female, age 79, unknown 23.9
2568 Male, age 61, both hemispheres 23.1
1956 Male, age 74, unknown 21.5
2491 Male, age 75, both hemispheres 21.1
2198 Male, age 80, both hemispheres 17.9
2284 Female, age 91, both hemispheres 17.9
2392 Female, age 94, both hemispheres 15.4
Globus pallidus, externus
nTPM: 44.7
2567 Female, age 72, unknown 85.9
2646 Male, age 61, right hemisphere 50.8
1996 Male, age 80, right hemisphere 33.5
2772 Female, age 79, unknown 29.7
2395 Male, age 75, both hemispheres 23.6
Globus pallidus, internus
nTPM: 43.8
2111 Female, age 85, right hemisphere 70.9
2566 Female, age 72, unknown 65.0
2778 Female, age 91, both hemispheres 40.2
1818 Male, age 74, unknown 39.0
2037 Male, age 80, right hemisphere 38.2
2287 Male, age 75, right hemisphere 29.9
2483 Female, age 94, right hemisphere 23.5
Nucleus accumbens
nTPM: 17.4
2732 Male, age 80, right hemisphere 30.9
2391 Female, age 94, left hemisphere 24.8
2698 Female, age 72, unknown 17.2
2824 Male, age 61, right hemisphere 15.9
1806 Female, age 85, left hemisphere 15.3
1783 Male, age 74, unknown 12.9
2286 Male, age 75, left hemisphere 12.6
1856 Female, age 91, right hemisphere 9.9
Nucleus basalis of Meynert
nTPM: 22.8
2569 Male, age 61, both hemispheres 43.2
2821 Male, age 75, both hemispheres 21.2
2484 Female, age 94, left hemisphere 15.3
2393 Male, age 80, right hemisphere 11.6
Nucleus of the diagonal band
nTPM: 12.4
1979 Male, age 74, unknown 15.8
1812 Female, age 91, both hemispheres 12.9
2029 Male, age 61, right hemisphere 11.7
2775 Male, age 80, right hemisphere 11.0
2195 Female, age 85, both hemispheres 10.9
Olfactory tubercle
nTPM: 11.8
2487 Female, age 94, left hemisphere 15.2
2856 Male, age 75, right hemisphere 11.3
1846 Male, age 80, right hemisphere 10.5
1998 Female, age 91, both hemispheres 10.3
Putamen
nTPM: 16.1
2489 Female, age 72, unknown 26.5
2647 Male, age 75, left hemisphere 21.2
2482 Female, age 94, left hemisphere 15.3
1829 Male, age 74, unknown 14.6
1937 Female, age 91, right hemisphere 12.9
2466 Female, age 79, unknown 11.9
1838 Male, age 80, right hemisphere 10.5
Septal nuclei
nTPM: 16.3
2199 Male, age 80, right hemisphere 29.8
2059 Female, age 85, both hemispheres 22.9
2394 Male, age 61, left hemisphere 22.3
2009 Female, age 91, both hemispheres 13.8
2629 Female, age 94, right hemisphere 9.7
1960 Male, age 74, unknown 9.0
2031 Female, age 72, unknown 6.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.1
Samples: 246

Max nTPM: 80.4
Min nTPM: 4.3
Std nTPM: 11.5
Median nTPM: 23.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 80.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 72.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 60.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 60.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 58.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 57.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 56.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 55.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 52.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 52.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 51.3
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.8
Samples: 246

Max nTPM: 70.3
Min nTPM: 4.2
Std nTPM: 10.2
Median nTPM: 21.0
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 70.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 67.2
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 54.8
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 52.3
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 50.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 49.0
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 47.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 47.7
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 47.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 47.0
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 45.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 24.3
Samples: 205

Max nTPM: 68.3
Min nTPM: 5.7
Std nTPM: 10.6
Median nTPM: 22.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 68.3
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 56.8
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 53.4
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 49.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 48.9
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 47.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 46.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 46.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 46.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 45.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 45.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.3
FF:10164-103B2 76 years, female 20.3
Globus pallidus
Scaled Tags Per Million: 22.0
FF:10161-103A8 76 years, female 22.7
FF:10175-103C4 60 years, female 21.3
Nucleus accumbens
Scaled Tags Per Million: 12.6
FF:10037-101F1 23-56 years, mixed 12.6
Putamen
Scaled Tags Per Million: 14.1
FF:10176-103C5 60 years, female 14.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.2
Pig sample Sample description nTPM
Caudate
nTPM: 3.7
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.2
Sample A Female 4.4
Sample B Female 3.6
Sample C Male 3.2
Sample D Male 3.4
Putamen
nTPM: 5.2
Samples: 4

Max nTPM: 9.8
Min nTPM: 3.0
Sample A Female 9.8
Sample B Female 3.1
Sample C Male 3.0
Sample D Male 5.0
Septum
nTPM: 3.4
Samples: 4

Max nTPM: 5.3
Min nTPM: 2.0
Sample A Female 5.3
Sample B Female 3.3
Sample C Male 2.9
Sample D Male 2.0
Ventral pallidum
nTPM: 4.5
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 4.1
Sample C Male 5.2
Sample D Male 4.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Male 0.5
Sample B Male 0.8
Sample C Female 0.5
Sample D Female 0.8
Septum
nTPM: 1.0
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.4
Sample A Male 1.5
Sample B Male 1.2
Sample C Female 0.4
Sample D Female 0.7
Ventral forebrain
nTPM: 1.5
Samples: 4

Max nTPM: 2.1
Min nTPM: 0.7
Sample A Male 2.0
Sample B Male 0.7
Sample C Female 2.1
Sample D Female 1.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.