ABOUTMENU
HELP
NEWS
EFR3B
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.7 nTPM
HPA:51.7 nTPM
GTEx:23.1 nTPM
FANTOM5:92.5 Scaled Tags Per Million
Pig:48.4 nTPM
Mouse:54.7 nTPM
Allen mouse:4.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038089
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 51.7
Sample id Sample description nTPM
Hippocampus
nTPM: 41.1
1855 Male, age 76, left hemisphere 61.2
1898 Male, age 80, left hemisphere 53.1
2148 Female, age 91, left hemisphere 44.3
2621 Female, age 67, right hemisphere 38.7
1911 Female, age 85, right hemisphere 27.8
2529 Female, age 94, left hemisphere 21.5
Dentate gyrus
nTPM: 38.7
2010 Male, age 76, both hemispheres 54.8
1927 Female, age 91, both hemispheres 53.4
2528 Male, age 74, both hemispheres 33.0
2530 Female, age 94, left hemisphere 31.9
2246 Female, age 85, both hemispheres 29.4
2531 Female, age 67, both hemispheres 29.4
Entorhinal gyrus
nTPM: 20.5
1938 Female, age 85, left hemisphere 23.1
2764 Male, age 80, right hemisphere 23.1
2613 Female, age 94, left hemisphere 21.1
2686 Male, age 75, right hemisphere 20.8
1787 Male, age 76, left hemisphere 19.6
2117 Female, age 91, right hemisphere 15.1
Hippocampus, CA1
nTPM: 51.7
2749 Male, age 80, left hemisphere 95.0
1873 Female, age 85, both hemispheres 49.2
2527 Male, age 74, both hemispheres 44.1
2045 Male, age 76, both hemispheres 43.6
2082 Female, age 91, right hemisphere 26.7
Hippocampus, CA2
nTPM: 36.2
1963 Male, age 80, left hemisphere 70.0
1892 Male, age 76, both hemispheres 54.6
2249 Male, age 74, both hemispheres 32.4
2113 Female, age 91, right hemisphere 24.7
2437 Female, age 94, left hemisphere 22.5
1940 Female, age 85, left hemisphere 12.7
Hippocampus, CA3
nTPM: 37.6
2137 Male, age 80, left hemisphere 57.0
2861 Female, age 67, both hemispheres 47.4
2620 Female, age 94, left hemisphere 36.0
1867 Male, age 76, both hemispheres 35.9
2436 Male, age 74, both hemispheres 25.4
1891 Female, age 85, both hemispheres 24.1
Parahippocampal cortex
nTPM: 23.4
2018 Male, age 76, both hemispheres 34.3
2245 Female, age 91, both hemispheres 33.3
2693 Female, age 94, both hemispheres 27.0
1933 Female, age 85, both hemispheres 24.3
2692 Male, age 74, both hemispheres 22.1
2250 Female, age 67, right hemisphere 22.0
2622 Female, age 67, right hemisphere 19.9
1990 Female, age 91, right hemisphere 19.5
1850 Male, age 80, both hemispheres 16.7
2532 Female, age 72, left hemisphere 15.1
Perirhinal gyrus
nTPM: 24.6
1847 Female, age 91, left hemisphere 40.0
2521 Female, age 94, right hemisphere 29.9
1794 Male, age 80, right hemisphere 21.5
1841 Female, age 85, right hemisphere 18.6
2848 Male, age 76, right hemisphere 13.2
Subiculum
nTPM: 22.1
2729 Female, age 91, right hemisphere 27.4
1901 Male, age 80, both hemispheres 25.2
1977 Female, age 85, both hemispheres 24.8
2619 Male, age 74, both hemispheres 22.5
2042 Male, age 76, both hemispheres 20.1
2438 Female, age 94, left hemisphere 12.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.1
Samples: 197

Max nTPM: 58.6
Min nTPM: 5.3
Std nTPM: 9.5
Median nTPM: 22.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 58.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 55.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 53.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 51.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 41.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 41.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 40.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 39.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 39.1
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 38.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 38.7
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 92.5
FF:10169-103B7 60 years, female 105.6
FF:10153-102I9 76 years, female 79.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 48.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 37.2
Samples: 4

Max nTPM: 44.8
Min nTPM: 25.8
Sample A Female 41.6
Sample B Female 36.6
Sample C Male 44.8
Sample D Male 25.8
Entorhinal cortex
nTPM: 22.7
Samples: 4

Max nTPM: 28.2
Min nTPM: 18.1
Sample A Female 28.2
Sample B Female 20.0
Sample C Male 24.3
Sample D Male 18.1
Subiculum
nTPM: 30.8
Samples: 4

Max nTPM: 42.9
Min nTPM: 20.7
Sample A Female 42.9
Sample B Female 20.7
Sample C Male 38.2
Sample D Male 21.5
Ventral hippocampus
nTPM: 48.4
Samples: 4

Max nTPM: 72.4
Min nTPM: 26.4
Sample A Female 72.4
Sample B Female 26.8
Sample C Male 68.0
Sample D Male 26.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 54.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 54.5
Samples: 4

Max nTPM: 58.2
Min nTPM: 50.4
Sample A Male 56.7
Sample B Male 52.6
Sample C Female 50.4
Sample D Female 58.2
Hippocampal formation
nTPM: 54.7
Samples: 4

Max nTPM: 63.9
Min nTPM: 49.1
Sample A Male 49.6
Sample B Male 56.2
Sample C Female 63.9
Sample D Female 49.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.3
74958645 Antisense, RP_060315_05_B11, Mouse strain C57BL/6J (56 days, male) 5.0
70230861 Antisense, RP_050524_04_F10, Mouse strain C57BL/6J (56 days, male) 3.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.