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CHMP5
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.7 nTPM
HPA:49.7 nTPM
GTEx:72.2 nTPM
FANTOM5:147.7 Scaled Tags Per Million
Pig:84.5 nTPM
Mouse:148.4 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.4
1870 Female, age 42, unknown 50.4
2411 Female, age 72, unknown 48.2
1827 Male, age 72, unknown 47.5
1830 Male, age 51, unknown 46.7
1833 Male, age 53, unknown 46.7
2019 Male, age 18, unknown 46.5
2666 Male, age 74, left hemisphere 45.9
2828 Female, age 72, unknown 45.3
2219 Male, age 76, both hemispheres 45.0
2586 Male, age 75, left hemisphere 41.6
Dorsal raphe nucleus
nTPM: 47.6
2298 Female, age 72, unknown 50.2
2750 Male, age 76, both hemispheres 49.0
2016 Female, age 72, unknown 46.5
1828 Male, age 53, unknown 46.4
2047 Male, age 72, unknown 46.0
Inferior colliculus
nTPM: 47.1
2097 Female, age 72, unknown 49.6
1848 Female, age 42, unknown 46.8
1890 Male, age 53, unknown 46.3
2849 Male, age 72, unknown 45.5
Median raphe nucleus
nTPM: 48.6
2220 Male, age 76, midline 48.6
Pedunculopontine tegmental nucleus
nTPM: 49.7
2334 Male, age 80, both hemispheres 50.8
2338 Male, age 61, both hemispheres 49.9
1921 Female, age 85, both hemispheres 48.5
Periaquaductal grey, anterior
nTPM: 47.5
1947 Male, age 18, unknown 49.6
2502 Female, age 75, unknown 47.8
1795 Male, age 51, unknown 45.2
Periaquaductal grey, dorsal
nTPM: 46.3
2850 Male, age 76, both hemispheres 48.0
1840 Male, age 53, unknown 46.3
2464 Female, age 72, unknown 46.0
1831 Male, age 72, unknown 44.8
Periaquaductal grey, lateral
nTPM: 46.0
2272 Male, age 74, both hemispheres 46.5
2053 Male, age 18, unknown 45.9
2140 Male, age 76, both hemispheres 45.6
Pretectal area
nTPM: 47.5
2224 Female, age 72, unknown 49.0
1817 Female, age 42, unknown 48.5
2007 Male, age 72, unknown 48.5
1815 Male, age 53, unknown 48.2
2825 Male, age 18, unknown 48.2
2273 Male, age 74, both hemispheres 47.8
2667 Female, age 75, unknown 47.8
1816 Male, age 51, unknown 47.6
1944 Female, age 72, unknown 46.5
2316 Male, age 76, right hemisphere 46.3
2407 Male, age 75, both hemispheres 43.8
Red nucleus
nTPM: 47.9
1821 Female, age 72, unknown 53.3
1954 Female, age 42, unknown 50.4
1904 Male, age 53, unknown 49.2
2503 Female, age 72, unknown 49.1
1865 Male, age 51, unknown 48.7
2823 Male, age 76, right hemisphere 48.3
2725 Female, age 75, unknown 47.5
2769 Male, age 72, unknown 47.5
2227 Male, age 72, unknown 47.3
2785 Male, age 18, unknown 46.2
2588 Male, age 74, left hemisphere 44.3
2584 Male, age 75, left hemisphere 43.1
Substantia nigra
nTPM: 47.2
2241 Male, age 72, unknown 50.9
1889 Female, age 72, unknown 48.7
1851 Male, age 51, unknown 48.2
1941 Male, age 53, unknown 47.6
1916 Female, age 42, unknown 47.5
2409 Female, age 72, unknown 46.5
2590 Female, age 75, unknown 46.0
2665 Male, age 74, both hemispheres 45.9
2699 Male, age 18, unknown 45.5
2583 Male, age 75, right hemisphere 44.6
Superior colliculus
nTPM: 46.5
2587 Male, age 74, left hemisphere 48.7
1895 Male, age 76, right hemisphere 47.9
1913 Female, age 42, unknown 47.0
2668 Female, age 75, unknown 47.0
1839 Male, age 51, unknown 46.6
2261 Male, age 18, unknown 46.6
2087 Female, age 72, unknown 46.4
1796 Male, age 53, unknown 46.1
1995 Male, age 72, unknown 45.9
2664 Male, age 75, both hemispheres 42.8
Ventral tegmental area
nTPM: 47.3
2223 Female, age 72, unknown 48.3
2410 Female, age 72, unknown 47.9
1915 Female, age 42, unknown 47.6
2218 Male, age 76, both hemispheres 47.3
1942 Male, age 51, unknown 46.5
2021 Male, age 53, unknown 46.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.2
Samples: 139

Max nTPM: 117.5
Min nTPM: 47.5
Std nTPM: 11.4
Median nTPM: 71.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 117.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 111.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 105.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 97.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 97.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 96.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 94.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 90.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 90.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 90.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 90.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 147.7
FF:10158-103A5 76 years, female 147.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.5
Pig sample Sample description nTPM
Midbrain
nTPM: 84.5
Samples: 4

Max nTPM: 103.1
Min nTPM: 71.5
Sample A Female 103.1
Sample B Female 75.0
Sample C Male 88.3
Sample D Male 71.5
Periaqueductal gray
nTPM: 66.5
Samples: 3

Max nTPM: 76.3
Min nTPM: 58.9
Sample B Female 58.9
Sample C Male 76.3
Sample D Male 64.2
Substantia nigra
nTPM: 76.5
Samples: 4

Max nTPM: 98.6
Min nTPM: 57.3
Sample A Female 98.6
Sample B Female 70.0
Sample C Male 80.0
Sample D Male 57.3
Superior colliculi
nTPM: 82.8
Samples: 4

Max nTPM: 97.7
Min nTPM: 73.5
Sample A Female 97.7
Sample B Female 76.8
Sample C Male 83.2
Sample D Male 73.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 148.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 148.4
Samples: 4

Max nTPM: 150.6
Min nTPM: 145.3
Sample A Male 147.5
Sample B Male 145.3
Sample C Female 150.0
Sample D Female 150.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
413815 Antisense, RP_040809_01_F11, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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