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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.6 nTPM
HPA:48.6 nTPM
GTEx:63.1 nTPM
FANTOM5:155.1 Scaled Tags Per Million
Pig:67.1 nTPM
Mouse:85.0 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.7
2411 Female, age 72, unknown 48.8
2019 Male, age 18, unknown 48.2
1870 Female, age 42, unknown 48.1
1827 Male, age 72, unknown 47.7
1833 Male, age 53, unknown 47.3
1830 Male, age 51, unknown 47.0
2219 Male, age 76, both hemispheres 45.4
2828 Female, age 72, unknown 45.4
2666 Male, age 74, left hemisphere 44.8
2586 Male, age 75, left hemisphere 44.0
Dorsal raphe nucleus
nTPM: 47.4
2298 Female, age 72, unknown 48.1
2750 Male, age 76, both hemispheres 47.8
1828 Male, age 53, unknown 47.2
2047 Male, age 72, unknown 47.1
2016 Female, age 72, unknown 46.6
Inferior colliculus
nTPM: 46.9
2097 Female, age 72, unknown 48.5
1890 Male, age 53, unknown 47.5
1848 Female, age 42, unknown 46.2
2849 Male, age 72, unknown 45.5
Median raphe nucleus
nTPM: 47.0
2220 Male, age 76, midline 47.0
Pedunculopontine tegmental nucleus
nTPM: 48.6
2338 Male, age 61, both hemispheres 50.7
2334 Male, age 80, both hemispheres 47.9
1921 Female, age 85, both hemispheres 47.3
Periaquaductal grey, anterior
nTPM: 46.2
1947 Male, age 18, unknown 47.3
2502 Female, age 75, unknown 46.4
1795 Male, age 51, unknown 45.0
Periaquaductal grey, dorsal
nTPM: 45.5
2850 Male, age 76, both hemispheres 45.8
1840 Male, age 53, unknown 45.5
2464 Female, age 72, unknown 45.5
1831 Male, age 72, unknown 45.3
Periaquaductal grey, lateral
nTPM: 46.4
2272 Male, age 74, both hemispheres 49.2
2053 Male, age 18, unknown 46.4
2140 Male, age 76, both hemispheres 43.8
Pretectal area
nTPM: 47.3
1944 Female, age 72, unknown 49.8
1817 Female, age 42, unknown 48.9
2007 Male, age 72, unknown 48.9
2667 Female, age 75, unknown 48.5
1816 Male, age 51, unknown 48.2
1815 Male, age 53, unknown 48.0
2273 Male, age 74, both hemispheres 47.7
2224 Female, age 72, unknown 47.2
2316 Male, age 76, right hemisphere 44.9
2825 Male, age 18, unknown 44.6
2407 Male, age 75, both hemispheres 44.1
Red nucleus
nTPM: 47.9
1821 Female, age 72, unknown 52.2
2725 Female, age 75, unknown 49.6
1865 Male, age 51, unknown 48.9
1904 Male, age 53, unknown 48.9
1954 Female, age 42, unknown 48.2
2823 Male, age 76, right hemisphere 48.1
2785 Male, age 18, unknown 47.5
2503 Female, age 72, unknown 47.3
2227 Male, age 72, unknown 47.1
2769 Male, age 72, unknown 46.8
2588 Male, age 74, left hemisphere 45.3
2584 Male, age 75, left hemisphere 44.8
Substantia nigra
nTPM: 48.5
2409 Female, age 72, unknown 54.0
1916 Female, age 42, unknown 50.7
2241 Male, age 72, unknown 50.0
1851 Male, age 51, unknown 49.4
1889 Female, age 72, unknown 48.9
1941 Male, age 53, unknown 48.4
2699 Male, age 18, unknown 47.9
2665 Male, age 74, both hemispheres 46.4
2590 Female, age 75, unknown 45.0
2583 Male, age 75, right hemisphere 43.9
Superior colliculus
nTPM: 47.0
2587 Male, age 74, left hemisphere 50.0
1895 Male, age 76, right hemisphere 49.1
2087 Female, age 72, unknown 47.8
1913 Female, age 42, unknown 47.7
2261 Male, age 18, unknown 47.6
2668 Female, age 75, unknown 47.1
1995 Male, age 72, unknown 46.2
1839 Male, age 51, unknown 45.7
1796 Male, age 53, unknown 45.6
2664 Male, age 75, both hemispheres 43.3
Ventral tegmental area
nTPM: 47.7
2410 Female, age 72, unknown 49.6
2223 Female, age 72, unknown 48.6
1915 Female, age 42, unknown 48.2
2218 Male, age 76, both hemispheres 47.3
1942 Male, age 51, unknown 46.7
2021 Male, age 53, unknown 45.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.1
Samples: 139

Max nTPM: 103.0
Min nTPM: 37.6
Std nTPM: 11.4
Median nTPM: 61.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 103.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 100.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 91.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 90.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 89.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 87.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 84.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 82.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 82.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 81.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 81.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 155.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 155.1
FF:10158-103A5 76 years, female 155.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 67.1
Pig sample Sample description nTPM
Midbrain
nTPM: 66.0
Samples: 4

Max nTPM: 81.4
Min nTPM: 51.1
Sample A Female 81.4
Sample B Female 68.2
Sample C Male 63.3
Sample D Male 51.1
Periaqueductal gray
nTPM: 49.8
Samples: 3

Max nTPM: 54.8
Min nTPM: 44.2
Sample B Female 54.8
Sample C Male 50.5
Sample D Male 44.2
Substantia nigra
nTPM: 61.6
Samples: 4

Max nTPM: 82.3
Min nTPM: 45.0
Sample A Female 82.3
Sample B Female 64.9
Sample C Male 54.3
Sample D Male 45.0
Superior colliculi
nTPM: 67.1
Samples: 4

Max nTPM: 72.4
Min nTPM: 57.9
Sample A Female 72.4
Sample B Female 70.1
Sample C Male 67.9
Sample D Male 57.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.0
Samples: 4

Max nTPM: 88.5
Min nTPM: 80.9
Sample A Male 87.4
Sample B Male 88.5
Sample C Female 80.9
Sample D Female 83.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
70527975 Antisense, RP_050623_01_E09, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas project is funded
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