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SF3B2
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:117.9 nTPM
HPA:117.9 nTPM
GTEx:111.5 nTPM
FANTOM5:157.8 Scaled Tags Per Million
Pig:55.8 nTPM
Mouse:119.5 nTPM
Allen mouse:13.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA045028
Glial cells High
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 117.9
Sample id Sample description nTPM
Hippocampus
nTPM: 116.4
2621 Female, age 67, right hemisphere 124.7
1855 Male, age 76, left hemisphere 119.9
1898 Male, age 80, left hemisphere 118.9
2529 Female, age 94, left hemisphere 114.9
1911 Female, age 85, right hemisphere 111.1
2148 Female, age 91, left hemisphere 108.7
Dentate gyrus
nTPM: 114.3
2530 Female, age 94, left hemisphere 121.4
2010 Male, age 76, both hemispheres 121.0
2528 Male, age 74, both hemispheres 116.3
1927 Female, age 91, both hemispheres 112.1
2246 Female, age 85, both hemispheres 112.0
2531 Female, age 67, both hemispheres 102.8
Entorhinal gyrus
nTPM: 117.4
2613 Female, age 94, left hemisphere 124.6
2764 Male, age 80, right hemisphere 120.8
1938 Female, age 85, left hemisphere 118.8
1787 Male, age 76, left hemisphere 116.1
2117 Female, age 91, right hemisphere 114.2
2686 Male, age 75, right hemisphere 110.2
Hippocampus, CA1
nTPM: 117.9
2749 Male, age 80, left hemisphere 129.4
1873 Female, age 85, both hemispheres 119.6
2045 Male, age 76, both hemispheres 117.0
2082 Female, age 91, right hemisphere 111.7
2527 Male, age 74, both hemispheres 111.6
Hippocampus, CA2
nTPM: 114.4
1892 Male, age 76, both hemispheres 118.2
1963 Male, age 80, left hemisphere 118.2
2249 Male, age 74, both hemispheres 117.3
1940 Female, age 85, left hemisphere 114.0
2437 Female, age 94, left hemisphere 110.0
2113 Female, age 91, right hemisphere 108.9
Hippocampus, CA3
nTPM: 117.6
2620 Female, age 94, left hemisphere 122.7
2137 Male, age 80, left hemisphere 121.0
1867 Male, age 76, both hemispheres 119.9
2436 Male, age 74, both hemispheres 118.1
1891 Female, age 85, both hemispheres 114.0
2861 Female, age 67, both hemispheres 109.7
Parahippocampal cortex
nTPM: 113.2
2622 Female, age 67, right hemisphere 122.7
2692 Male, age 74, both hemispheres 115.9
2018 Male, age 76, both hemispheres 114.8
1850 Male, age 80, both hemispheres 113.7
1933 Female, age 85, both hemispheres 113.2
1990 Female, age 91, right hemisphere 112.7
2250 Female, age 67, right hemisphere 111.5
2532 Female, age 72, left hemisphere 109.9
2693 Female, age 94, both hemispheres 109.8
2245 Female, age 91, both hemispheres 107.8
Perirhinal gyrus
nTPM: 114.9
1794 Male, age 80, right hemisphere 116.6
1841 Female, age 85, right hemisphere 116.2
1847 Female, age 91, left hemisphere 114.9
2848 Male, age 76, right hemisphere 113.7
2521 Female, age 94, right hemisphere 113.1
Subiculum
nTPM: 115.7
2619 Male, age 74, both hemispheres 125.0
2042 Male, age 76, both hemispheres 123.6
1901 Male, age 80, both hemispheres 115.7
1977 Female, age 85, both hemispheres 114.3
2438 Female, age 94, left hemisphere 108.8
2729 Female, age 91, right hemisphere 106.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 111.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 111.5
Samples: 197

Max nTPM: 241.9
Min nTPM: 80.7
Std nTPM: 18.6
Median nTPM: 108.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 241.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 181.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 165.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 156.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 147.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 147.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 144.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 143.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 143.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 142.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 139.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 157.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 157.8
FF:10153-102I9 76 years, female 159.7
FF:10169-103B7 60 years, female 155.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 55.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 55.8
Samples: 4

Max nTPM: 69.6
Min nTPM: 44.8
Sample A Female 69.6
Sample B Female 52.3
Sample C Male 56.4
Sample D Male 44.8
Entorhinal cortex
nTPM: 48.7
Samples: 4

Max nTPM: 52.1
Min nTPM: 42.1
Sample A Female 52.1
Sample B Female 52.0
Sample C Male 48.4
Sample D Male 42.1
Subiculum
nTPM: 48.8
Samples: 4

Max nTPM: 63.6
Min nTPM: 41.6
Sample A Female 63.6
Sample B Female 44.7
Sample C Male 45.2
Sample D Male 41.6
Ventral hippocampus
nTPM: 54.6
Samples: 4

Max nTPM: 67.5
Min nTPM: 40.4
Sample A Female 53.1
Sample B Female 40.4
Sample C Male 67.5
Sample D Male 57.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 119.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 116.2
Samples: 4

Max nTPM: 123.0
Min nTPM: 111.3
Sample A Male 113.9
Sample B Male 116.5
Sample C Female 111.3
Sample D Female 123.0
Hippocampal formation
nTPM: 119.5
Samples: 4

Max nTPM: 128.1
Min nTPM: 109.0
Sample A Male 109.0
Sample B Male 120.5
Sample C Female 128.1
Sample D Female 120.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.1
74988735 Antisense, RP_060315_04_B03, Mouse strain C57BL/6J (56 days, male) 13.7
70593345 Antisense, RP_050407_04_A05, Mouse strain C57BL/6J (56 days, male) 12.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.